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The map label for this gene is sohB [H]

Identifier: 77459336

GI number: 77459336

Start: 3572958

End: 3573980

Strand: Reverse

Name: sohB [H]

Synonym: Pfl01_3114

Alternate gene names: 77459336

Gene position: 3573980-3572958 (Counterclockwise)

Preceding gene: 77459339

Following gene: 77459333

Centisome position: 55.51

GC content: 59.82

Gene sequence:

>1023_bases
GTGGAGTTTTTGACTGAATACGCCAGTTTCCTGGCCAAGACCGTGACGCTGGTCATCGCCATTCTGGTGGTGCTGGCGAG
TTTTGCTGCGTTGCGCAGCAAGGGCCGGCGCAAATCTGCCGGCCAGTTGCAGGTCAGCAAGCTCAACGATTTCTATAAAG
GCCTGCGTGAGCGGCTGGAGCAGACCCTGCTCGACAAGGATCAGCTCAAGGCCTTGCGCAAGGGCCAGGCCAAGTCCGAA
AAGAAACAGAAGAAGAAACCCGACGCCAAACCGCGGGTATTCGTGCTGGACTTCGACGGCGACATCAAGGCCTCGGCGAC
TGAAAGCCTGCGCCACGAGATCACCGCGCTACTGACCCTGGCCACACCGAAGGACGAAGTGGTCCTGCGTCTGGAGAGCG
GCGGCGGCATGGTTCACAGCTATGGTCTGGCCTCGTCGCAACTGGCGCGCATCCGGGAAGCCGGCGTGCCGTTGACCGTG
TGCATCGACAAGGTCGCGGCGAGCGGCGGCTACATGATGGCGTGCATCGGCGAGAAGATCATCAGCGCGCCGTTTGCGAT
TCTCGGCTCCATCGGTGTGGTGGCGCAGTTGCCCAACGTCAACCGCCTGCTGAAAAAGCACGACATCGATTTCGAAGTGC
TGACCGCTGGCGAATACAAACGCACCCTGACCGTATTTGGCGAAAACACCGAGAAGGGTCGGGAAAAGTTTCAGGAAGAC
CTGGACATCACCCACCAGCTGTTCAAGAACTTCGTTGCCCGCTATCGCCCGCAACTGGCGATCGACGAAGTCGCCACCGG
TGAAGTCTGGCTCGGCATCGCGGCATTGGAAAAGCAACTGGTCGACGAGCTCAAGACCAGCGACGAATACCTGGCCGAGC
GTGCCAAACAGTCCGAGGTCTATCACCTGCACTATGCCGAACGCAAAAGCCTCCAGGAACGTATCGGCATGGCCGCCAGC
GGTTCGGTGGATCGCGTGTTGTTGAGCTGGTGGAGCCGGCTGACCCAGCAACGATTCTGGTGA

Upstream 100 bases:

>100_bases
TGCCAGAGGTTTCACGGCTGGCCGACGGGCCGGTGCATGGGTATGCTGGAGCCAATTCCCGCGTGTGTTTCACGACCGCG
CATCGTTTGAAGGAGTCACT

Downstream 100 bases:

>100_bases
ATCGGGCATAAAAAAACGCCGGTCGAATGACCGGCGTTTTTTTGTGTTTGACTCAGGGTTTTATCGACGACGGAACAGCG
GCAGCGGTTCATCGGTGGCG

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MEFLTEYASFLAKTVTLVIAILVVLASFAALRSKGRRKSAGQLQVSKLNDFYKGLRERLEQTLLDKDQLKALRKGQAKSE
KKQKKKPDAKPRVFVLDFDGDIKASATESLRHEITALLTLATPKDEVVLRLESGGGMVHSYGLASSQLARIREAGVPLTV
CIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQED
LDITHQLFKNFVARYRPQLAIDEVATGEVWLGIAALEKQLVDELKTSDEYLAERAKQSEVYHLHYAERKSLQERIGMAAS
GSVDRVLLSWWSRLTQQRFW

Sequences:

>Translated_340_residues
MEFLTEYASFLAKTVTLVIAILVVLASFAALRSKGRRKSAGQLQVSKLNDFYKGLRERLEQTLLDKDQLKALRKGQAKSE
KKQKKKPDAKPRVFVLDFDGDIKASATESLRHEITALLTLATPKDEVVLRLESGGGMVHSYGLASSQLARIREAGVPLTV
CIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQED
LDITHQLFKNFVARYRPQLAIDEVATGEVWLGIAALEKQLVDELKTSDEYLAERAKQSEVYHLHYAERKSLQERIGMAAS
GSVDRVLLSWWSRLTQQRFW
>Mature_340_residues
MEFLTEYASFLAKTVTLVIAILVVLASFAALRSKGRRKSAGQLQVSKLNDFYKGLRERLEQTLLDKDQLKALRKGQAKSE
KKQKKKPDAKPRVFVLDFDGDIKASATESLRHEITALLTLATPKDEVVLRLESGGGMVHSYGLASSQLARIREAGVPLTV
CIDKVAASGGYMMACIGEKIISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQED
LDITHQLFKNFVARYRPQLAIDEVATGEVWLGIAALEKQLVDELKTSDEYLAERAKQSEVYHLHYAERKSLQERIGMAAS
GSVDRVLLSWWSRLTQQRFW

Specific function: Multicopy suppressor of the htrA (degP) null phenotype. It is possibly a protease, not essential for bacterial viability [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=344, Percent_Identity=54.0697674418605, Blast_Score=344, Evalue=5e-96,
Organism=Escherichia coli, GI1788064, Length=224, Percent_Identity=29.0178571428571, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 38058; Mature: 38058

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLTEYASFLAKTVTLVIAILVVLASFAALRSKGRRKSAGQLQVSKLNDFYKGLRERLE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
QTLLDKDQLKALRKGQAKSEKKQKKKPDAKPRVFVLDFDGDIKASATESLRHEITALLTL
HHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC
ATPKDEVVLRLESGGGMVHSYGLASSQLARIREAGVPLTVCIDKVAASGGYMMACIGEKI
CCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHH
ISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQED
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHH
LDITHQLFKNFVARYRPQLAIDEVATGEVWLGIAALEKQLVDELKTSDEYLAERAKQSEV
HHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCE
YHLHYAERKSLQERIGMAASGSVDRVLLSWWSRLTQQRFW
EEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEFLTEYASFLAKTVTLVIAILVVLASFAALRSKGRRKSAGQLQVSKLNDFYKGLRERLE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
QTLLDKDQLKALRKGQAKSEKKQKKKPDAKPRVFVLDFDGDIKASATESLRHEITALLTL
HHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC
ATPKDEVVLRLESGGGMVHSYGLASSQLARIREAGVPLTVCIDKVAASGGYMMACIGEKI
CCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEHHHHHHHH
ISAPFAILGSIGVVAQLPNVNRLLKKHDIDFEVLTAGEYKRTLTVFGENTEKGREKFQED
HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHH
LDITHQLFKNFVARYRPQLAIDEVATGEVWLGIAALEKQLVDELKTSDEYLAERAKQSEV
HHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCE
YHLHYAERKSLQERIGMAASGSVDRVLLSWWSRLTQQRFW
EEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885549; 9097039; 9278503; 3029379 [H]