| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is nfuA [H]
Identifier: 77459326
GI number: 77459326
Start: 3556094
End: 3556678
Strand: Reverse
Name: nfuA [H]
Synonym: Pfl01_3104
Alternate gene names: 77459326
Gene position: 3556678-3556094 (Counterclockwise)
Preceding gene: 77459327
Following gene: 77459321
Centisome position: 55.24
GC content: 60.51
Gene sequence:
>585_bases ATGACCGCTATTACCATTACCGACGCCGCCCATGATTACCTGGCCGATCTGCTCTCCAAGCAGAACACCCCGGGCATCGG CATCCGCGTTTTCATCACCCAGCCTGGCACCCAGTACGCCGAAACCTGCATTGCCTACTGCAAGCCGGGCGAAGAGAAAC CTGAAGACACGGCGCTGGGGCTGAAAAGCTTCACCGCTTACATCGACTCGTTCAGCGAAGCGTTCCTCGATGATGCCGTC GTCGACTACGCCACCGACCGCATGGGCGGCCAGCTGACCATCAAGGCGCCAAACGCCAAAGTCCCGATGGTCAACGCCGA CAGCCCGATCAACGAGCGCATCAACTACTACCTGCAAACCGAAATCAACCCGGGACTGGCCAGCCACGGCGGTCAGGTCA GCCTGATCGATGTGGTTGAAGACGGCATTGCCGTATTGCAGTTCGGCGGCGGTTGCCAGGGCTGCGGCCAGGCGGACGTG ACCCTGAAGGAAGGCATCGAGCGCACCCTGCTTGAGCGCATTCCGGAGCTCAAGGGCGTGCGCGACGTGACCGACCACAC GCAGAAAGAAAACGCCTACTACTAA
Upstream 100 bases:
>100_bases GGCGCTTAGCCGATTTGCGAACTATTCCTACGTAAATAGTAGGACTTTGTGCCGCGCGCCGATTGGCGTAAACTCCGCCT CAAGCCTGCGAGGAGTCTCC
Downstream 100 bases:
>100_bases GGTGTTCGCTGCGGCATGAAAAACGGCGCCCCGTGAGCGCCGTTTTTTTATGGCCGGTACAAATGCGCATGCCCGGCGCG ATACAGCGAAGACTCGCTGA
Product: HesB/YadR/YfhF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MTAITITDAAHDYLADLLSKQNTPGIGIRVFITQPGTQYAETCIAYCKPGEEKPEDTALGLKSFTAYIDSFSEAFLDDAV VDYATDRMGGQLTIKAPNAKVPMVNADSPINERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADV TLKEGIERTLLERIPELKGVRDVTDHTQKENAYY
Sequences:
>Translated_194_residues MTAITITDAAHDYLADLLSKQNTPGIGIRVFITQPGTQYAETCIAYCKPGEEKPEDTALGLKSFTAYIDSFSEAFLDDAV VDYATDRMGGQLTIKAPNAKVPMVNADSPINERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADV TLKEGIERTLLERIPELKGVRDVTDHTQKENAYY >Mature_193_residues TAITITDAAHDYLADLLSKQNTPGIGIRVFITQPGTQYAETCIAYCKPGEEKPEDTALGLKSFTAYIDSFSEAFLDDAVV DYATDRMGGQLTIKAPNAKVPMVNADSPINERINYYLQTEINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVT LKEGIERTLLERIPELKGVRDVTDHTQKENAYY
Specific function: Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins [H]
COG id: COG0694
COG function: function code O; Thioredoxin-like proteins and domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nfuA family [H]
Homologues:
Organism=Escherichia coli, GI1789819, Length=191, Percent_Identity=53.9267015706806, Blast_Score=217, Evalue=4e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017726 - InterPro: IPR000361 - InterPro: IPR001075 - ProDom: PD002830 [H]
Pfam domain/function: PF01521 Fe-S_biosyn; PF01106 NifU [H]
EC number: NA
Molecular weight: Translated: 21008; Mature: 20877
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAITITDAAHDYLADLLSKQNTPGIGIRVFITQPGTQYAETCIAYCKPGEEKPEDTALG CEEEEECHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHH LKSFTAYIDSFSEAFLDDAVVDYATDRMGGQLTIKAPNAKVPMVNADSPINERINYYLQT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCHHCCCEEEEEE EINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTLKEGIERTLLERIPELKGV CCCCCCCCCCCCEEEEEEHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC RDVTDHTQKENAYY HHHHHHHCCCCCCC >Mature Secondary Structure TAITITDAAHDYLADLLSKQNTPGIGIRVFITQPGTQYAETCIAYCKPGEEKPEDTALG EEEEECHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHH LKSFTAYIDSFSEAFLDDAVVDYATDRMGGQLTIKAPNAKVPMVNADSPINERINYYLQT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCHHCCCEEEEEE EINPGLASHGGQVSLIDVVEDGIAVLQFGGGCQGCGQADVTLKEGIERTLLERIPELKGV CCCCCCCCCCCCEEEEEEHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC RDVTDHTQKENAYY HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA