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The map label for this gene is ydeS [H]

Identifier: 77459280

GI number: 77459280

Start: 3499382

End: 3500011

Strand: Direct

Name: ydeS [H]

Synonym: Pfl01_3058

Alternate gene names: 77459280

Gene position: 3499382-3500011 (Clockwise)

Preceding gene: 77459270

Following gene: 77459281

Centisome position: 54.35

GC content: 57.78

Gene sequence:

>630_bases
ATGACCGAAATCAGCCAGACCCGGCGCGGCCGGCCAGCCAACGAGGCACTCAGCCAATCGATCGTCGACGCGGCCGGCGA
ACTTTTTGTGGAGTTGGGATTTCAAGCGACAACAATGGAAAAGGTCGCCCAGCGGGCAAAAATATCTAAGCTAAGCATCT
ACCGACACTTCGAGAACAAGGAGGCGCTATTCAGCGCGGCCATCGCGGCCCACTGCCATCAGTTTGCACCACAGGCCATT
GCTGAAGGCGTCGACGGTTCGGCTGCAGAGCAGCTAATGGCGGTGGGGACATTCCTGCTGCGCACGTTGTTGAGTCCGGA
AGTGCGCAGTGTTGAAGCCATGATCATGGTCGACAAGGCGAAGCAAAAGTCGTTGAGCAAGCTCCATTACGAAGCCGGCC
CCGCCTATGTCACTGCCCAGATCGAGGCCCTGTTGCGTCAGTTGCACGCGGAGGCGATGCTAAATGTGCCAGACCCTTTG
GAGTCTGCCCGGTTGTTTGCCGCGCTTATCAAAGGGTCCGATCTTCTGATGATCGCCCGCTTCGATGAGGCGAAGGCAAA
GGACGACAATGAAGTCGAATCCTATTGCCGGTCGGCCGTCGCAATGTTCATCGCAGCGCACGGTGCTTAG

Upstream 100 bases:

>100_bases
AGGCTCCGCGTTGTGGCTGAAGGGACTTGGGTTTTACTGTTTGGATACTTTCGAGTACCATAATCCCTAAATTACGATAC
CGTCAAGTACTGGAATTTTT

Downstream 100 bases:

>100_bases
TGTTTGATTTGAACGCCTGATTTCGGTCGTTGGCTGGACATCACAAATGGCAGATTTCGGCCGTTTGTAGTCGCTTGCCA
ACGTCCGCTTTTGGTTGTGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTEISQTRRGRPANEALSQSIVDAAGELFVELGFQATTMEKVAQRAKISKLSIYRHFENKEALFSAAIAAHCHQFAPQAI
AEGVDGSAAEQLMAVGTFLLRTLLSPEVRSVEAMIMVDKAKQKSLSKLHYEAGPAYVTAQIEALLRQLHAEAMLNVPDPL
ESARLFAALIKGSDLLMIARFDEAKAKDDNEVESYCRSAVAMFIAAHGA

Sequences:

>Translated_209_residues
MTEISQTRRGRPANEALSQSIVDAAGELFVELGFQATTMEKVAQRAKISKLSIYRHFENKEALFSAAIAAHCHQFAPQAI
AEGVDGSAAEQLMAVGTFLLRTLLSPEVRSVEAMIMVDKAKQKSLSKLHYEAGPAYVTAQIEALLRQLHAEAMLNVPDPL
ESARLFAALIKGSDLLMIARFDEAKAKDDNEVESYCRSAVAMFIAAHGA
>Mature_208_residues
TEISQTRRGRPANEALSQSIVDAAGELFVELGFQATTMEKVAQRAKISKLSIYRHFENKEALFSAAIAAHCHQFAPQAIA
EGVDGSAAEQLMAVGTFLLRTLLSPEVRSVEAMIMVDKAKQKSLSKLHYEAGPAYVTAQIEALLRQLHAEAMLNVPDPLE
SARLFAALIKGSDLLMIARFDEAKAKDDNEVESYCRSAVAMFIAAHGA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22735; Mature: 22604

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEISQTRRGRPANEALSQSIVDAAGELFVELGFQATTMEKVAQRAKISKLSIYRHFENK
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
EALFSAAIAAHCHQFAPQAIAEGVDGSAAEQLMAVGTFLLRTLLSPEVRSVEAMIMVDKA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KQKSLSKLHYEAGPAYVTAQIEALLRQLHAEAMLNVPDPLESARLFAALIKGSDLLMIAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEE
FDEAKAKDDNEVESYCRSAVAMFIAAHGA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEISQTRRGRPANEALSQSIVDAAGELFVELGFQATTMEKVAQRAKISKLSIYRHFENK
CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH
EALFSAAIAAHCHQFAPQAIAEGVDGSAAEQLMAVGTFLLRTLLSPEVRSVEAMIMVDKA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KQKSLSKLHYEAGPAYVTAQIEALLRQLHAEAMLNVPDPLESARLFAALIKGSDLLMIAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEE
FDEAKAKDDNEVESYCRSAVAMFIAAHGA
CCCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]