Click here to switch to the map view.

The map label for this gene is xylS3 [H]

Identifier: 77459194

GI number: 77459194

Start: 3406433

End: 3407407

Strand: Reverse

Name: xylS3 [H]

Synonym: Pfl01_2969

Alternate gene names: 77459194

Gene position: 3407407-3406433 (Counterclockwise)

Preceding gene: 77459195

Following gene: 77459193

Centisome position: 52.92

GC content: 54.77

Gene sequence:

>975_bases
ATGACTCTAGTAATTGCAACTTCGAGCCATCTGCTCAGTGAGCGCAGTAGCATTTTTCGGGATGCGGATCCTTACGCGGT
GTCCGACTACGTGAACTTGCACGTTGGATCCCATCGCATCGGTCTCTCTCGAACCACCCACCCCCAGGCCAGCCTGAACC
ATCGAAAATTCGCCGGTCTCGATCTGTGCCGCATCAGCTACGGCGGAAGCGTGCGTGTCACGTCGCCTGCGCTGGAAAGC
GTCTACCACCTTCAGGTGTTGCTTAGCGGCAATTGTTTGTGGCGAGGCTATCAGCATGAGCACTACCTGCTTCCGGGCGA
ATTGCTGCTGATCAATCCAGACGATCCTGTCGACCTGACGTACTCTCAAGACTGCGAAAAATTCATTGTTAAGTTGCCCG
TTCAGTTGCTTGAATCGATATGTGATGAGCTGCGATGGTTGCGGCCTGCGACGGGCATACGTTTTCTGCGTAACCACTAT
CAGCTGGATGAGTTGGAAGGGTTTCTTGGCTTATTGGCGATGATTTGCCAGGAGTCCGAGGCCAGTACTCCGATCATGCG
GGTACAAGAGCATTACGCCCAGATAGTCGGCAGCAAGCTGCTTTCGCTCATGACCACCAACGTCAGCCGCGAAGGCGCAG
GATCACAATCGGCCAGCTTCGATCGCATTCTCGATTACATAGACCGGAATCTGAAACAGGACTTGAACGCCGAGCACTTG
GCACAACAGGTCAGTATGAGCACCAGGTCCTTGTACGTACTGTTCGAGCGCCACTTGGGTACCACACCCTTGCAGTACAT
TCGCCAGCGCAAACTGGAACGCATTCAAGCGTGCCTGAGCGACCCGAGTTGCCCGGTCCGCAGCCTGACTGAAGTGGCGC
TGGACTACGGTTTTCTTCACTTAGGCCGCTTCTCTGAGCTTTACCGTTCGCAGTTCGGCGAGCTTCCTTCGCAAACCCTC
AAATCACGCGTCTGA

Upstream 100 bases:

>100_bases
TTGATCGTCAGTCCAAAGGGGACGTGTGGTTGCCGACGCGCCGTCAAGCCTGGAGGCATTTACATCACGCCAGGCGCAGG
TTTCACTTCGGGTGGGCGTA

Downstream 100 bases:

>100_bases
ACGCGCCATCCTGGCGCGCTGGTGCCGCTGATCCATCCTGCGCGACGGCTGCGCAAAATGGATAGCGATCTGCAGGAATC
GGATATTTCCTCCTGAATTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MTLVIATSSHLLSERSSIFRDADPYAVSDYVNLHVGSHRIGLSRTTHPQASLNHRKFAGLDLCRISYGGSVRVTSPALES
VYHLQVLLSGNCLWRGYQHEHYLLPGELLLINPDDPVDLTYSQDCEKFIVKLPVQLLESICDELRWLRPATGIRFLRNHY
QLDELEGFLGLLAMICQESEASTPIMRVQEHYAQIVGSKLLSLMTTNVSREGAGSQSASFDRILDYIDRNLKQDLNAEHL
AQQVSMSTRSLYVLFERHLGTTPLQYIRQRKLERIQACLSDPSCPVRSLTEVALDYGFLHLGRFSELYRSQFGELPSQTL
KSRV

Sequences:

>Translated_324_residues
MTLVIATSSHLLSERSSIFRDADPYAVSDYVNLHVGSHRIGLSRTTHPQASLNHRKFAGLDLCRISYGGSVRVTSPALES
VYHLQVLLSGNCLWRGYQHEHYLLPGELLLINPDDPVDLTYSQDCEKFIVKLPVQLLESICDELRWLRPATGIRFLRNHY
QLDELEGFLGLLAMICQESEASTPIMRVQEHYAQIVGSKLLSLMTTNVSREGAGSQSASFDRILDYIDRNLKQDLNAEHL
AQQVSMSTRSLYVLFERHLGTTPLQYIRQRKLERIQACLSDPSCPVRSLTEVALDYGFLHLGRFSELYRSQFGELPSQTL
KSRV
>Mature_323_residues
TLVIATSSHLLSERSSIFRDADPYAVSDYVNLHVGSHRIGLSRTTHPQASLNHRKFAGLDLCRISYGGSVRVTSPALESV
YHLQVLLSGNCLWRGYQHEHYLLPGELLLINPDDPVDLTYSQDCEKFIVKLPVQLLESICDELRWLRPATGIRFLRNHYQ
LDELEGFLGLLAMICQESEASTPIMRVQEHYAQIVGSKLLSLMTTNVSREGAGSQSASFDRILDYIDRNLKQDLNAEHLA
QQVSMSTRSLYVLFERHLGTTPLQYIRQRKLERIQACLSDPSCPVRSLTEVALDYGFLHLGRFSELYRSQFGELPSQTLK
SRV

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36766; Mature: 36635

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVIATSSHLLSERSSIFRDADPYAVSDYVNLHVGSHRIGLSRTTHPQASLNHRKFAGL
CEEEEECHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCHHCCC
DLCRISYGGSVRVTSPALESVYHLQVLLSGNCLWRGYQHEHYLLPGELLLINPDDPVDLT
EEEEEECCCEEEECCHHHHHHHHHHHEEECCEEEECCCCCEEECCCCEEEECCCCCCCCC
YSQDCEKFIVKLPVQLLESICDELRWLRPATGIRFLRNHYQLDELEGFLGLLAMICQESE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
ASTPIMRVQEHYAQIVGSKLLSLMTTNVSREGAGSQSASFDRILDYIDRNLKQDLNAEHL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
AQQVSMSTRSLYVLFERHLGTTPLQYIRQRKLERIQACLSDPSCPVRSLTEVALDYGFLH
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LGRFSELYRSQFGELPSQTLKSRV
HHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
TLVIATSSHLLSERSSIFRDADPYAVSDYVNLHVGSHRIGLSRTTHPQASLNHRKFAGL
EEEEECHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCHHCCC
DLCRISYGGSVRVTSPALESVYHLQVLLSGNCLWRGYQHEHYLLPGELLLINPDDPVDLT
EEEEEECCCEEEECCHHHHHHHHHHHEEECCEEEECCCCCEEECCCCEEEECCCCCCCCC
YSQDCEKFIVKLPVQLLESICDELRWLRPATGIRFLRNHYQLDELEGFLGLLAMICQESE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
ASTPIMRVQEHYAQIVGSKLLSLMTTNVSREGAGSQSASFDRILDYIDRNLKQDLNAEHL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
AQQVSMSTRSLYVLFERHLGTTPLQYIRQRKLERIQACLSDPSCPVRSLTEVALDYGFLH
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LGRFSELYRSQFGELPSQTLKSRV
HHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]