| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is catB [H]
Identifier: 77459188
GI number: 77459188
Start: 3399964
End: 3401085
Strand: Reverse
Name: catB [H]
Synonym: Pfl01_2963
Alternate gene names: 77459188
Gene position: 3401085-3399964 (Counterclockwise)
Preceding gene: 77459189
Following gene: 77459187
Centisome position: 52.82
GC content: 57.58
Gene sequence:
>1122_bases ATGAGCCAAGTCCTGATCCACAGCCTGTCGGCGATCATCGTCGACCTGCCGACTATTCGTCCGCACAAGCTCGCCATGCA CACGATGCAAAAGCAAACCTTGGTCATTCTGCGGCTTCAATGCAGTGACGGCATCGAAGGTATCGGCGAAGCCACCACCA TCGGCGGTTTGTCCTATGGCTATGAAAGCCCGGAGAGCATCAAGGCCAACGTTGACGCTCACTTGGCGCCCGCGCTGGTA GGCATGGCAGCGGACAACATTAATGCCGCGATGCAAAAACTCGACAAGATTGCCAAGGGCAATACCTTTGCCAAATCCGG TATCGAAAGCGCTCTACTCGATGCCCAGGGCAAACGAGTTGGAATGGCCGTCAGCGAGCTGCTTGGCGGTCGGGTACGCG ACAGTCTGGAAGTCGCCTGGACGCTTGCCAGCGGCGATACCGCCCGGGACATTGCCGAGGCCGAGCAGATGTTGGAGCTG CGCCGTCATCGCATCTTCAAACTGAAGATCGGCGCCAATCCTTTGGAGCAGGATCTCAAGCATGTCGTTGCGATCAAAAA GGCCCTTGGCGATCGTGCCAGTGTAAGGGTCGACGTCAACCAATATTGGGACGAGTCTCAGGCAATACGTGGCTGCCAGG TGCTTGGCGAGAACGGCATTGATCTGATCGAGCAACCCATCTCACGGGTTAATCGATCAGGCCAGGTTCGGCTGAACCAG CGAGGCCCGGCACCCATCATGGCCGATGAGTCAATTGAAAGCGTCGAAGACGCGTTCAGCCTGGCGGCGGATGGCGCAGC CAGCGTCTTCGCGCTAAAAATCGCAAAAAATGGTGGCCCTCGCGCTGTGCTGCGTACGGCACAGATTGCCGAAGCGGCGG GCATCGCCCTGTACGGGGGGACGATGCTGGAAGGTGCCATCGGCACTTTAGCTTCAGCTCATGCATTCCTCACGCTTAAA CACCTGACCTGGGACACAGAGCTGTTTGGTCCGCTCTTGTTGACCGAAGACATCGTGGTCGAGCGACCACAGTACCGTGA CTTCCAGCTTCTTGTTCCATCCACGCCAGGCTTGGGATTGGCATTGGATGAAGATCGCCTGGCTCATTTTCGCCGTTCCT GA
Upstream 100 bases:
>100_bases GCCGATTCGAGTGTTTTGATGGCCGCCAAACCGTAACCAATCTTGCCTTGTTCCTTGAGCGGAACCAGGTGTCTCTCAGT TCACGTATCGGAATATTGTC
Downstream 100 bases:
>100_bases ACCCGCAACCCTATAAGGAGAGCACCATGCTATTCCACGTCAAGATGACCGTGAACCTCCCACTCGATATGGATGCGAGC AGGGCAGCGCAGCTCAAAGC
Product: muconate cycloisomerase
Products: NA
Alternate protein names: Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I [H]
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MSQVLIHSLSAIIVDLPTIRPHKLAMHTMQKQTLVILRLQCSDGIEGIGEATTIGGLSYGYESPESIKANVDAHLAPALV GMAADNINAAMQKLDKIAKGNTFAKSGIESALLDAQGKRVGMAVSELLGGRVRDSLEVAWTLASGDTARDIAEAEQMLEL RRHRIFKLKIGANPLEQDLKHVVAIKKALGDRASVRVDVNQYWDESQAIRGCQVLGENGIDLIEQPISRVNRSGQVRLNQ RGPAPIMADESIESVEDAFSLAADGAASVFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLEGAIGTLASAHAFLTLK HLTWDTELFGPLLLTEDIVVERPQYRDFQLLVPSTPGLGLALDEDRLAHFRRS
Sequences:
>Translated_373_residues MSQVLIHSLSAIIVDLPTIRPHKLAMHTMQKQTLVILRLQCSDGIEGIGEATTIGGLSYGYESPESIKANVDAHLAPALV GMAADNINAAMQKLDKIAKGNTFAKSGIESALLDAQGKRVGMAVSELLGGRVRDSLEVAWTLASGDTARDIAEAEQMLEL RRHRIFKLKIGANPLEQDLKHVVAIKKALGDRASVRVDVNQYWDESQAIRGCQVLGENGIDLIEQPISRVNRSGQVRLNQ RGPAPIMADESIESVEDAFSLAADGAASVFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLEGAIGTLASAHAFLTLK HLTWDTELFGPLLLTEDIVVERPQYRDFQLLVPSTPGLGLALDEDRLAHFRRS >Mature_372_residues SQVLIHSLSAIIVDLPTIRPHKLAMHTMQKQTLVILRLQCSDGIEGIGEATTIGGLSYGYESPESIKANVDAHLAPALVG MAADNINAAMQKLDKIAKGNTFAKSGIESALLDAQGKRVGMAVSELLGGRVRDSLEVAWTLASGDTARDIAEAEQMLELR RHRIFKLKIGANPLEQDLKHVVAIKKALGDRASVRVDVNQYWDESQAIRGCQVLGENGIDLIEQPISRVNRSGQVRLNQR GPAPIMADESIESVEDAFSLAADGAASVFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLEGAIGTLASAHAFLTLKH LTWDTELFGPLLLTEDIVVERPQYRDFQLLVPSTPGLGLALDEDRLAHFRRS
Specific function: Catalyzes a syn cycloisomerization [H]
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI87081876, Length=260, Percent_Identity=27.3076923076923, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013370 - InterPro: IPR018110 - InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: =5.5.1.1 [H]
Molecular weight: Translated: 40133; Mature: 40001
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00908 MR_MLE_1 ; PS00909 MR_MLE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQVLIHSLSAIIVDLPTIRPHKLAMHTMQKQTLVILRLQCSDGIEGIGEATTIGGLSYG CCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEECCCCCC YESPESIKANVDAHLAPALVGMAADNINAAMQKLDKIAKGNTFAKSGIESALLDAQGKRV CCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH GMAVSELLGGRVRDSLEVAWTLASGDTARDIAEAEQMLELRRHRIFKLKIGANPLEQDLK HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHH HVVAIKKALGDRASVRVDVNQYWDESQAIRGCQVLGENGIDLIEQPISRVNRSGQVRLNQ HHHHHHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECC RGPAPIMADESIESVEDAFSLAADGAASVFALKIAKNGGPRAVLRTAQIAEAAGIALYGG CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEECC TMLEGAIGTLASAHAFLTLKHLTWDTELFGPLLLTEDIVVERPQYRDFQLLVPSTPGLGL HHHHHHHHHHHHHHHEEEEEEEECCHHHHCHHHCCCHHHHCCCCCCCEEEEECCCCCCCE ALDEDRLAHFRRS EECHHHHHHHHCC >Mature Secondary Structure SQVLIHSLSAIIVDLPTIRPHKLAMHTMQKQTLVILRLQCSDGIEGIGEATTIGGLSYG CHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEECCCCCC YESPESIKANVDAHLAPALVGMAADNINAAMQKLDKIAKGNTFAKSGIESALLDAQGKRV CCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH GMAVSELLGGRVRDSLEVAWTLASGDTARDIAEAEQMLELRRHRIFKLKIGANPLEQDLK HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHH HVVAIKKALGDRASVRVDVNQYWDESQAIRGCQVLGENGIDLIEQPISRVNRSGQVRLNQ HHHHHHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECC RGPAPIMADESIESVEDAFSLAADGAASVFALKIAKNGGPRAVLRTAQIAEAAGIALYGG CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCEEEECC TMLEGAIGTLASAHAFLTLKHLTWDTELFGPLLLTEDIVVERPQYRDFQLLVPSTPGLGL HHHHHHHHHHHHHHHEEEEEEEECCHHHHCHHHCCCHHHHCCCCCCCEEEEECCCCCCCE ALDEDRLAHFRRS EECHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3609743; 2449420; 2215699; 3612800; 7500361 [H]