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The map label for this gene is cdaR [H]

Identifier: 77459134

GI number: 77459134

Start: 3354271

End: 3355395

Strand: Reverse

Name: cdaR [H]

Synonym: Pfl01_2909

Alternate gene names: 77459134

Gene position: 3355395-3354271 (Counterclockwise)

Preceding gene: 77459136

Following gene: 77459133

Centisome position: 52.12

GC content: 61.42

Gene sequence:

>1125_bases
ATGTTCGAACTCGATCACGACCTCGCCCAGGACATCGTCGACCGGGCCATGGCCATTTTGCCGTACAACGTCAACGTCAT
GGACAGCCAGGGATTGATCCTGGGCAGTGGAGAGCCGGAGCGGATCAACACTCGCCATGAAGGCGCGCAACTGGTACTGG
CCAACGGGCGAGTGGTGGAGATAGATGCGCAGACCGCCGTGCATTTGAAAGGCGTGCAACCGGGGATCAACCTGCCGCTA
TTGCTCGATCAGCGTTTGATCGGTGTACTCGGTATCACCGGCGAGCCGGAGCAATTGCGCACTTACGCCGAACTGGTGCG
CATGACGGCTGAAATGCTGGTCGGCCAGCGCAACCAGCAATCCGAACAGCAATGGCGGCGGCAGCGTTGCGATGATTTGC
TGGCCTTGCTGCTGAGCGAGGCGGGGGATTCGCCAAGGCTGGTCGATGAGGCCCAGCAACTCGGGCTCAAACCGCAACTG
ACGCGGGTGCCGTATCTGTTCGAGTTGGGCCTGGAACATGGGCCGGGGCAAACCGTCGAGGCGCTGAGTGCCTGGCTGAT
GTCGCGTTATCCGGACAGTTGGTGCGTGAGTTCGGCCAAGTCGTCACTGCTGTGGTGCCGGCCGGCGAGTCAGAACGTCG
AGCATGATCGACTGCTGGAAAAACTCGATGGCTTGGGCTGGAACATCCTGCGCATTGCGGTCGGCGGGCAGGCTGATGGG
CTGACCGGGTTGCGCCGTTGCTATCGGCGGGTCGGCGATTTGCTCGCCTATGGCCGCGAAGTGCTGCCGCGCTCACGGCT
GTTGACCCTCAATCGCTATCGCTTGCCGGTGATGCTCTGGCGCCATCGCAACGACGATGCGCTGGATGAACTGCTCAAAC
CGTTACGCAAAGTGATCGCCAAGGACAGCAACGGCCAGTTGCTCGCGACCTTGCGCAGCTGGTGCGATCACGACGGGCAG
AGCCAGGCCTGCGCCGATGCCTTGGGGATTCACCGCAACAGTCTGCGTTACCGGATGGAGCGGATTGCCGAGTTGAGCGG
GGTCGATCCGCTGAAGCTCGACGGGATGCTGGCGTTGTATCTGGGTGTGCAATTGCTGCCACAGACCGACGATTTGTCGA
AATGA

Upstream 100 bases:

>100_bases
CCTTTGGCCGGATTGTCTTTGTGCCTGAGCACAGGGTTTGCTGCCAGACCCTGTGCGGGTGAACAACCGTCCGCGCCTGT
TTTCAAGGATTCCAACCCTT

Downstream 100 bases:

>100_bases
ACAATAAACGCCTGCGCCACTTGTGCAGCGGACAGGCGTCAACGGGCAAGGCGACTGGCAGCATGAGGGGCATTGGAACT
GGAGAAATCGCATGAAAATC

Product: CdaR family transcriptional regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MFELDHDLAQDIVDRAMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRVVEIDAQTAVHLKGVQPGINLPL
LLDQRLIGVLGITGEPEQLRTYAELVRMTAEMLVGQRNQQSEQQWRRQRCDDLLALLLSEAGDSPRLVDEAQQLGLKPQL
TRVPYLFELGLEHGPGQTVEALSAWLMSRYPDSWCVSSAKSSLLWCRPASQNVEHDRLLEKLDGLGWNILRIAVGGQADG
LTGLRRCYRRVGDLLAYGREVLPRSRLLTLNRYRLPVMLWRHRNDDALDELLKPLRKVIAKDSNGQLLATLRSWCDHDGQ
SQACADALGIHRNSLRYRMERIAELSGVDPLKLDGMLALYLGVQLLPQTDDLSK

Sequences:

>Translated_374_residues
MFELDHDLAQDIVDRAMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRVVEIDAQTAVHLKGVQPGINLPL
LLDQRLIGVLGITGEPEQLRTYAELVRMTAEMLVGQRNQQSEQQWRRQRCDDLLALLLSEAGDSPRLVDEAQQLGLKPQL
TRVPYLFELGLEHGPGQTVEALSAWLMSRYPDSWCVSSAKSSLLWCRPASQNVEHDRLLEKLDGLGWNILRIAVGGQADG
LTGLRRCYRRVGDLLAYGREVLPRSRLLTLNRYRLPVMLWRHRNDDALDELLKPLRKVIAKDSNGQLLATLRSWCDHDGQ
SQACADALGIHRNSLRYRMERIAELSGVDPLKLDGMLALYLGVQLLPQTDDLSK
>Mature_374_residues
MFELDHDLAQDIVDRAMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRVVEIDAQTAVHLKGVQPGINLPL
LLDQRLIGVLGITGEPEQLRTYAELVRMTAEMLVGQRNQQSEQQWRRQRCDDLLALLLSEAGDSPRLVDEAQQLGLKPQL
TRVPYLFELGLEHGPGQTVEALSAWLMSRYPDSWCVSSAKSSLLWCRPASQNVEHDRLLEKLDGLGWNILRIAVGGQADG
LTGLRRCYRRVGDLLAYGREVLPRSRLLTLNRYRLPVMLWRHRNDDALDELLKPLRKVIAKDSNGQLLATLRSWCDHDGQ
SQACADALGIHRNSLRYRMERIAELSGVDPLKLDGMLALYLGVQLLPQTDDLSK

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=380, Percent_Identity=37.6315789473684, Blast_Score=218, Evalue=6e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 41967; Mature: 41967

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELDHDLAQDIVDRAMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRVVE
CCCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEECCCCCCCCCCCCCCEEEEECCEEEE
IDAQTAVHLKGVQPGINLPLLLDQRLIGVLGITGEPEQLRTYAELVRMTAEMLVGQRNQQ
EECCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
SEQQWRRQRCDDLLALLLSEAGDSPRLVDEAQQLGLKPQLTRVPYLFELGLEHGPGQTVE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCHHHEECCCCCCCHHHH
ALSAWLMSRYPDSWCVSSAKSSLLWCRPASQNVEHDRLLEKLDGLGWNILRIAVGGQADG
HHHHHHHHHCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCC
LTGLRRCYRRVGDLLAYGREVLPRSRLLTLNRYRLPVMLWRHRNDDALDELLKPLRKVIA
HHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHC
KDSNGQLLATLRSWCDHDGQSQACADALGIHRNSLRYRMERIAELSGVDPLKLDGMLALY
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LGVQLLPQTDDLSK
HHHHHCCCCCCCCC
>Mature Secondary Structure
MFELDHDLAQDIVDRAMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRVVE
CCCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEECCCCCCCCCCCCCCEEEEECCEEEE
IDAQTAVHLKGVQPGINLPLLLDQRLIGVLGITGEPEQLRTYAELVRMTAEMLVGQRNQQ
EECCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
SEQQWRRQRCDDLLALLLSEAGDSPRLVDEAQQLGLKPQLTRVPYLFELGLEHGPGQTVE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCHHHEECCCCCCCHHHH
ALSAWLMSRYPDSWCVSSAKSSLLWCRPASQNVEHDRLLEKLDGLGWNILRIAVGGQADG
HHHHHHHHHCCCHHHHHHHHCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCC
LTGLRRCYRRVGDLLAYGREVLPRSRLLTLNRYRLPVMLWRHRNDDALDELLKPLRKVIA
HHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHC
KDSNGQLLATLRSWCDHDGQSQACADALGIHRNSLRYRMERIAELSGVDPLKLDGMLALY
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LGVQLLPQTDDLSK
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]