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The map label for this gene is arnD

Identifier: 77459069

GI number: 77459069

Start: 3282048

End: 3282932

Strand: Direct

Name: arnD

Synonym: Pfl01_2844

Alternate gene names: 77459069

Gene position: 3282048-3282932 (Clockwise)

Preceding gene: 77459068

Following gene: 77459070

Centisome position: 50.98

GC content: 64.18

Gene sequence:

>885_bases
ATGCAGGCCGGTTTGCGCATCGATGTCGACACCTTTCGCGGCACCCGTGAAGGTGTGCCGCGCTTGCTGGAAATCCTCGA
TGAAGCGCAGATCAAAGCGACGTTTTTCTTCAGTGTCGGCCCGGACAACATGGGCCGGCACCTGTGGCGCCTGATCCGTC
CGCAGTTCCTCTGGAAGATGCTGCGCTCCAACGCCGCCGGCCTGTACGGCTGGGACATCCTGCTGGCGGGCACGGCGTGG
CCGGGCAAGCCGATCGGCCGCGACCTCGGGCACCTGATGCGTCAGGCCCGGGCCGCCGGCCACGAGGTCGGCCTGCACGC
CTGGGATCACCACGGCTGGCAGGCCAATGCCGGGCACTGGAGCGCTGCGCAACTGGTCGAGCAGATCCGTCAGGGCGTCG
ATACCTTGAGCGACATCCTCGGAGAAAAGGTCACGTGTTCAGCCGCCGCCGGTTGGCGTGCGGACGAGCGTGTGATCGAA
GCCAAGCAGGCCTTCGGCTTTCGCTACAACAGCGATTGCCGTGGGCAGCGGGTGTTCCGTCCGTTGCTGGCCGATGGCTC
GGTCGGTGCGCCGCAGATTCCGGTGGACCTGCCGACCTTCGATGAAGTGGTCGGGCCGAGCGTGGCAGCGAAGGATTTCA
ACGCCTTCATCCTCGACCGGTTCCGCCCTGAAAACCTCAACGTCTACACCATTCACGCCGAAGTAGAAGGGATTCTGATG
GCCGATGATTTTCGTCGACTGCTGGCCGAGGCACGCCAGCAAAACATTCACTTCCAACCGTTGGGCGATTTGCTGCCCGA
GTTTCTCAACTCCTTGCCCGTCGGCCGCGTGCAACGCGGCGCACTCGAAGGCCGTGAAGGCTGGCTGGGAGTGCAAGGCG
CATGA

Upstream 100 bases:

>100_bases
CGACCGTCGAAATGCGCGAGACCATCGGCAACACGCTGGACTTCTTCCTGCGCGAGGCCATGCTCGAAATCGAGAGGCCT
TCCAACAAAGAGGCATGCTG

Downstream 100 bases:

>100_bases
GCAAACGCTGGGCATTGCCGCTGTTGCTGGGGATTTTCCTGCTGGCCTATCTGCTGCCGCTGGGCAGCCATGGTTTGTGG
ATTCCCGATGAAACCCGTTA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQAGLRIDVDTFRGTREGVPRLLEILDEAQIKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAAGLYGWDILLAGTAW
PGKPIGRDLGHLMRQARAAGHEVGLHAWDHHGWQANAGHWSAAQLVEQIRQGVDTLSDILGEKVTCSAAAGWRADERVIE
AKQAFGFRYNSDCRGQRVFRPLLADGSVGAPQIPVDLPTFDEVVGPSVAAKDFNAFILDRFRPENLNVYTIHAEVEGILM
ADDFRRLLAEARQQNIHFQPLGDLLPEFLNSLPVGRVQRGALEGREGWLGVQGA

Sequences:

>Translated_294_residues
MQAGLRIDVDTFRGTREGVPRLLEILDEAQIKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAAGLYGWDILLAGTAW
PGKPIGRDLGHLMRQARAAGHEVGLHAWDHHGWQANAGHWSAAQLVEQIRQGVDTLSDILGEKVTCSAAAGWRADERVIE
AKQAFGFRYNSDCRGQRVFRPLLADGSVGAPQIPVDLPTFDEVVGPSVAAKDFNAFILDRFRPENLNVYTIHAEVEGILM
ADDFRRLLAEARQQNIHFQPLGDLLPEFLNSLPVGRVQRGALEGREGWLGVQGA
>Mature_294_residues
MQAGLRIDVDTFRGTREGVPRLLEILDEAQIKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAAGLYGWDILLAGTAW
PGKPIGRDLGHLMRQARAAGHEVGLHAWDHHGWQANAGHWSAAQLVEQIRQGVDTLSDILGEKVTCSAAAGWRADERVIE
AKQAFGFRYNSDCRGQRVFRPLLADGSVGAPQIPVDLPTFDEVVGPSVAAKDFNAFILDRFRPENLNVYTIHAEVEGILM
ADDFRRLLAEARQQNIHFQPLGDLLPEFLNSLPVGRVQRGALEGREGWLGVQGA

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily

Homologues:

Organism=Escherichia coli, GI1788590, Length=292, Percent_Identity=63.3561643835616, Blast_Score=373, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARND_PSEPF (Q3KCC0)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_348575.1
- ProteinModelPortal:   Q3KCC0
- STRING:   Q3KCC0
- GeneID:   3712608
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_2844
- eggNOG:   COG0726
- HOGENOM:   HBG298639
- OMA:   CSAVAGW
- ProtClustDB:   PRK15394
- BioCyc:   PFLU205922:PFL_2844-MONOMER
- HAMAP:   MF_01870
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 32732; Mature: 32732

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAGLRIDVDTFRGTREGVPRLLEILDEAQIKATFFFSVGPDNMGRHLWRLIRPQFLWKM
CCCCCEEEHHHHCCCCCCHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
LRSNAAGLYGWDILLAGTAWPGKPIGRDLGHLMRQARAAGHEVGLHAWDHHGWQANAGHW
HHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC
SAAQLVEQIRQGVDTLSDILGEKVTCSAAAGWRADERVIEAKQAFGFRYNSDCRGQRVFR
HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
PLLADGSVGAPQIPVDLPTFDEVVGPSVAAKDFNAFILDRFRPENLNVYTIHAEVEGILM
HHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE
ADDFRRLLAEARQQNIHFQPLGDLLPEFLNSLPVGRVQRGALEGREGWLGVQGA
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCEECCCC
>Mature Secondary Structure
MQAGLRIDVDTFRGTREGVPRLLEILDEAQIKATFFFSVGPDNMGRHLWRLIRPQFLWKM
CCCCCEEEHHHHCCCCCCHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
LRSNAAGLYGWDILLAGTAWPGKPIGRDLGHLMRQARAAGHEVGLHAWDHHGWQANAGHW
HHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC
SAAQLVEQIRQGVDTLSDILGEKVTCSAAAGWRADERVIEAKQAFGFRYNSDCRGQRVFR
HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
PLLADGSVGAPQIPVDLPTFDEVVGPSVAAKDFNAFILDRFRPENLNVYTIHAEVEGILM
HHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE
ADDFRRLLAEARQQNIHFQPLGDLLPEFLNSLPVGRVQRGALEGREGWLGVQGA
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA