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The map label for this gene is ycaN [H]

Identifier: 77459007

GI number: 77459007

Start: 3207475

End: 3208407

Strand: Reverse

Name: ycaN [H]

Synonym: Pfl01_2782

Alternate gene names: 77459007

Gene position: 3208407-3207475 (Counterclockwise)

Preceding gene: 77459011

Following gene: 77459006

Centisome position: 49.83

GC content: 60.66

Gene sequence:

>933_bases
ATGCGTAAACCAAACCTTACCGATGTGTCGATATTTGCTGCGGTGGTCGAGGCAGGGGGATTTCGAGCTGCGGCGCAGAA
GCGGGGTTTGTCCGCCTCGTCGCTGAGCGATTGCATACGTCGGCTGGAAGGCGACCTGGGCTTGCGCCTGCTCAATCGAA
CCACGCGCAGCGTCACGCCAACGGCGGCCGGCGAGCGATTGCTCGAGCGCCTGCGCCCGGCCTTGCAAGAAATCGACGCT
GCTTTCAACGATCTGGACGACGACGCTCAGCGTCCGGTCGGCACGCTGAAGCTCAATGTGCCAGTGCCGGTGGCCCGCTT
TTTGTTGCCCGACCTGCTGGCGCGTTTTCTGCGTCTTTATCCAGGGGTCAACGTCGAAGTCGTCATGGACAATACATTTG
TCGACGTCAACGCTGGCGGGTATGACGCCGGCGTGCGCTATGAAGAGAGCTTGGCCAGGGACATGATCGCCGTTCCCATC
GGCCCACGTCGCCAGCGCTTCGTTGCGGCGGCCGCCCCGTGCTATCTGGCTGAACGTGGGACGCCTACTCAGCCCGAAGA
ACTGCCGGGCCATGACCTGCTCGGGCATCGATTCGAGAGTGGAAAAGTGGGCGTGTTTGAGTTCCACCGAGACGGCCGTG
TTGTGCGTATCCCGCCTCAAGGACAATTGCTGACGTCATCGCACGATTTGAAAATCCAATCGGCCATCAACGGGCTGGGC
ATCGTGTATACCTTCGAGGATTTTCTGCGCGAGCCGCTATCCGATGGTCGACTGGTGCCGATTCTCGAGGACTGGTGGCA
GGCCTTCGACGGTCCTTTTCTTTACTACCACGGGCGCCGTCACATGCCTTCGCCGCTCAGGGCGTTTGTAGATTTTCTGC
GGGCCGAGCGGCAACTCGCAGAGAGCTCAAGCATCTTCAGCGCCGTGTCGTAA

Upstream 100 bases:

>100_bases
GTGAGCAGTATCGGTGTACGAGTGCGCGAGGATAAGTCGGGCATTGGTGGATGGCCCGTACGGCATGGCGTACAGTCAAC
CGCCTGCGGAGGAATAATCC

Downstream 100 bases:

>100_bases
GGCCTGCATCGACCGCAACCTGCGTGTCCGCTCAGGGTCAATCCGCCCCAACGAACACTGCAGCAACCCAAGGCCGTACC
ATTTCCATGCTTCTGGCGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MRKPNLTDVSIFAAVVEAGGFRAAAQKRGLSASSLSDCIRRLEGDLGLRLLNRTTRSVTPTAAGERLLERLRPALQEIDA
AFNDLDDDAQRPVGTLKLNVPVPVARFLLPDLLARFLRLYPGVNVEVVMDNTFVDVNAGGYDAGVRYEESLARDMIAVPI
GPRRQRFVAAAAPCYLAERGTPTQPEELPGHDLLGHRFESGKVGVFEFHRDGRVVRIPPQGQLLTSSHDLKIQSAINGLG
IVYTFEDFLREPLSDGRLVPILEDWWQAFDGPFLYYHGRRHMPSPLRAFVDFLRAERQLAESSSIFSAVS

Sequences:

>Translated_310_residues
MRKPNLTDVSIFAAVVEAGGFRAAAQKRGLSASSLSDCIRRLEGDLGLRLLNRTTRSVTPTAAGERLLERLRPALQEIDA
AFNDLDDDAQRPVGTLKLNVPVPVARFLLPDLLARFLRLYPGVNVEVVMDNTFVDVNAGGYDAGVRYEESLARDMIAVPI
GPRRQRFVAAAAPCYLAERGTPTQPEELPGHDLLGHRFESGKVGVFEFHRDGRVVRIPPQGQLLTSSHDLKIQSAINGLG
IVYTFEDFLREPLSDGRLVPILEDWWQAFDGPFLYYHGRRHMPSPLRAFVDFLRAERQLAESSSIFSAVS
>Mature_310_residues
MRKPNLTDVSIFAAVVEAGGFRAAAQKRGLSASSLSDCIRRLEGDLGLRLLNRTTRSVTPTAAGERLLERLRPALQEIDA
AFNDLDDDAQRPVGTLKLNVPVPVARFLLPDLLARFLRLYPGVNVEVVMDNTFVDVNAGGYDAGVRYEESLARDMIAVPI
GPRRQRFVAAAAPCYLAERGTPTQPEELPGHDLLGHRFESGKVGVFEFHRDGRVVRIPPQGQLLTSSHDLKIQSAINGLG
IVYTFEDFLREPLSDGRLVPILEDWWQAFDGPFLYYHGRRHMPSPLRAFVDFLRAERQLAESSSIFSAVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=39.1752577319588, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=35.5932203389831, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=29.3515358361775, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=29.0540540540541, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=28.2312925170068, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=26.9736842105263, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=25.0847457627119, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786448, Length=306, Percent_Identity=26.797385620915, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI145693105, Length=204, Percent_Identity=26.9607843137255, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=258, Percent_Identity=24.8062015503876, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786713, Length=265, Percent_Identity=27.9245283018868, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=31.6666666666667, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790399, Length=159, Percent_Identity=27.0440251572327, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34407; Mature: 34407

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPNLTDVSIFAAVVEAGGFRAAAQKRGLSASSLSDCIRRLEGDLGLRLLNRTTRSVTP
CCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
TAAGERLLERLRPALQEIDAAFNDLDDDAQRPVGTLKLNVPVPVARFLLPDLLARFLRLY
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
PGVNVEVVMDNTFVDVNAGGYDAGVRYEESLARDMIAVPIGPRRQRFVAAAAPCYLAERG
CCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHCCHHEECCC
TPTQPEELPGHDLLGHRFESGKVGVFEFHRDGRVVRIPPQGQLLTSSHDLKIQSAINGLG
CCCCCCCCCCCCHHCCCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCEEHHHHHCCCE
IVYTFEDFLREPLSDGRLVPILEDWWQAFDGPFLYYHGRRHMPSPLRAFVDFLRAERQLA
EEEEHHHHHHCCCCCCCEEEHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
ESSSIFSAVS
HHHHHHHHCC
>Mature Secondary Structure
MRKPNLTDVSIFAAVVEAGGFRAAAQKRGLSASSLSDCIRRLEGDLGLRLLNRTTRSVTP
CCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
TAAGERLLERLRPALQEIDAAFNDLDDDAQRPVGTLKLNVPVPVARFLLPDLLARFLRLY
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
PGVNVEVVMDNTFVDVNAGGYDAGVRYEESLARDMIAVPIGPRRQRFVAAAAPCYLAERG
CCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHCCHHEECCC
TPTQPEELPGHDLLGHRFESGKVGVFEFHRDGRVVRIPPQGQLLTSSHDLKIQSAINGLG
CCCCCCCCCCCCHHCCCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCEEHHHHHCCCE
IVYTFEDFLREPLSDGRLVPILEDWWQAFDGPFLYYHGRRHMPSPLRAFVDFLRAERQLA
EEEEHHHHHHCCCCCCCEEEHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
ESSSIFSAVS
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]