Click here to switch to the map view.

The map label for this gene is radA [C]

Identifier: 77458878

GI number: 77458878

Start: 3040771

End: 3042288

Strand: Reverse

Name: radA [C]

Synonym: Pfl01_2653

Alternate gene names: 77458878

Gene position: 3042288-3040771 (Counterclockwise)

Preceding gene: 77458879

Following gene: 77458877

Centisome position: 47.25

GC content: 59.09

Gene sequence:

>1518_bases
ATGAGAGGGCATTTTTTGTCTACATCGAACGCGTTGATCAGTGCAAAAGCCGCCACCGGCATCGAAGGGTTGGACGATAT
CCTCGCCGGTGGTCTGTCCCGCAGTCACGTTTTCTTGCTGGAGGGCGAGCCTGGAACCGGTAAAACCACAGTCGCGTTGC
ATTTTCTGCTGGCCGGCGCCCGTGCCGGCGAACGTTCGTTGTACATCACGTTGTCCGAAACCGAGCGCGAATTGCGCCAG
GGCGCGGCTTCCCACGGTTGGGAACTGAACGAAAACATCGAAATTTTCGAGCTGACGCCCCCGGAAAGTCTGTTGAACGC
CGAGCATCATCAGAGCCTGCTGTACTCCTCGGATCTTGAGCTGGGCGAGGCAACCAAGCAGATTTTCGAAGTGGTCGAGC
GCTTCAAGCCCACCCGGGTTGTGCTCGACAGCCTCTCGGAAATCCGCCTGCTGGCGCAAAGCTCCCTGCGCTATCGTCGA
CAGATTCTGGCGATCAAGCATTACTTCGTGCGCTACGACGCCACGGTATTGTTGCTGGACGACCTGACCACCGAATCCCT
CGACAAAACCGTTCACAGTGTCGCTCACGGCGTGATCCGCCTCGAAGAACTGACCCCCAACTACGGCGCCGAACGCCGTC
GCGTGCGGGTGATCAAGTACCGTGGCCAGAAATACCGTGGCGGCTTTCATGACTTCACCATCATGGGCGATGGCGTGCAC
GTCTTCCCGCGTCTGGTGGCGGCGGAACATCGGGGTGATTACCCACGGCTGCAACTGTCCAGCGGAATCAAGGAAATGGA
CGCCTTGCTCGGTGGCGGTATCGAAACCGGCTCCAGCACGCTGATTCTCGGACCGGCGGGCACGGGCAAATCCTTGATCA
CGATGATTTTCGCGGCGGCGGCCGTGGCCCGTGGAGAAAAGGCCGCCCTGTTCATTTTCGACGAAGAGCTGGGCTTGCTG
TTTGAGCGCATGAACAACATCGGCATTGACCTCAAGGCGTTGCAGGCCACCGGCAATCTGCTGATCGAACAGGTGGACGC
CGCCGAATTGTCCCCCGGCGAGTTCTCTCACCGGGTTCGACGCTGCGTCGATGAAGGTGACATCAAGACCGTGGTGATCG
ACAGCATCAACGGCTATCAGGCCGCGATGCCGGAAGAGAACGCCCTGGTGCTGCACATGCATGAACTGTTGCTGTACCTG
AACCGCAAGGGCGCCGCGACGTTCATGACCGTCGCCCAGCATGGACTGGTGGGCGACATGCAGGCCCCGGTCGACATCAC
TTACCTCGCCGACACTGTGATTCTGCTGCGTTATTTCGAAGCCCTCGGCAAGGTTCGCAGGGCAATTTCGATTATCAAGA
AACGCACCGGCAGCCACGAATCAACCATTCGCGAGTACCGTATTTCCAAGCGTGGCATGACCATCGGTGAACCGCTGGAC
GCCTTCCAGGGCGTACTGCGCGGCGTGCCTACTTACCTCGGCGCGAGTAATCCGCTGCTCAAGGATGACAACTTGTGA

Upstream 100 bases:

>100_bases
GCAACCTGCAAGAAACTCGGAACCGCCGTCTCGGCAAAAGGTCAAGTAATCAGGCAGTGCAAAACGGCGTCCGGCGCCCG
CTGCCTCGTTTCCCCTAGTC

Downstream 100 bases:

>100_bases
CCGTCACCGTGCCGCTGTCGGAACGAGCACTGATCCTTGCGCCCCTGGGGCGCGACAGCCAGGTTGCGCTGATGATCCTC
AACGAGGCCGGCTACGGTGG

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MRGHFLSTSNALISAKAATGIEGLDDILAGGLSRSHVFLLEGEPGTGKTTVALHFLLAGARAGERSLYITLSETERELRQ
GAASHGWELNENIEIFELTPPESLLNAEHHQSLLYSSDLELGEATKQIFEVVERFKPTRVVLDSLSEIRLLAQSSLRYRR
QILAIKHYFVRYDATVLLLDDLTTESLDKTVHSVAHGVIRLEELTPNYGAERRRVRVIKYRGQKYRGGFHDFTIMGDGVH
VFPRLVAAEHRGDYPRLQLSSGIKEMDALLGGGIETGSSTLILGPAGTGKSLITMIFAAAAVARGEKAALFIFDEELGLL
FERMNNIGIDLKALQATGNLLIEQVDAAELSPGEFSHRVRRCVDEGDIKTVVIDSINGYQAAMPEENALVLHMHELLLYL
NRKGAATFMTVAQHGLVGDMQAPVDITYLADTVILLRYFEALGKVRRAISIIKKRTGSHESTIREYRISKRGMTIGEPLD
AFQGVLRGVPTYLGASNPLLKDDNL

Sequences:

>Translated_505_residues
MRGHFLSTSNALISAKAATGIEGLDDILAGGLSRSHVFLLEGEPGTGKTTVALHFLLAGARAGERSLYITLSETERELRQ
GAASHGWELNENIEIFELTPPESLLNAEHHQSLLYSSDLELGEATKQIFEVVERFKPTRVVLDSLSEIRLLAQSSLRYRR
QILAIKHYFVRYDATVLLLDDLTTESLDKTVHSVAHGVIRLEELTPNYGAERRRVRVIKYRGQKYRGGFHDFTIMGDGVH
VFPRLVAAEHRGDYPRLQLSSGIKEMDALLGGGIETGSSTLILGPAGTGKSLITMIFAAAAVARGEKAALFIFDEELGLL
FERMNNIGIDLKALQATGNLLIEQVDAAELSPGEFSHRVRRCVDEGDIKTVVIDSINGYQAAMPEENALVLHMHELLLYL
NRKGAATFMTVAQHGLVGDMQAPVDITYLADTVILLRYFEALGKVRRAISIIKKRTGSHESTIREYRISKRGMTIGEPLD
AFQGVLRGVPTYLGASNPLLKDDNL
>Mature_505_residues
MRGHFLSTSNALISAKAATGIEGLDDILAGGLSRSHVFLLEGEPGTGKTTVALHFLLAGARAGERSLYITLSETERELRQ
GAASHGWELNENIEIFELTPPESLLNAEHHQSLLYSSDLELGEATKQIFEVVERFKPTRVVLDSLSEIRLLAQSSLRYRR
QILAIKHYFVRYDATVLLLDDLTTESLDKTVHSVAHGVIRLEELTPNYGAERRRVRVIKYRGQKYRGGFHDFTIMGDGVH
VFPRLVAAEHRGDYPRLQLSSGIKEMDALLGGGIETGSSTLILGPAGTGKSLITMIFAAAAVARGEKAALFIFDEELGLL
FERMNNIGIDLKALQATGNLLIEQVDAAELSPGEFSHRVRRCVDEGDIKTVVIDSINGYQAAMPEENALVLHMHELLLYL
NRKGAATFMTVAQHGLVGDMQAPVDITYLADTVILLRYFEALGKVRRAISIIKKRTGSHESTIREYRISKRGMTIGEPLD
AFQGVLRGVPTYLGASNPLLKDDNL

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 55657; Mature: 55657

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGHFLSTSNALISAKAATGIEGLDDILAGGLSRSHVFLLEGEPGTGKTTVALHFLLAGA
CCCCEECCCCCEEEEHHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCC
RAGERSLYITLSETERELRQGAASHGWELNENIEIFELTPPESLLNAEHHQSLLYSSDLE
CCCCCEEEEEEHHHHHHHHCCHHHCCCCCCCCEEEEEECCCHHHHCCHHHHHHHHHCCCC
LGEATKQIFEVVERFKPTRVVLDSLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DLTTESLDKTVHSVAHGVIRLEELTPNYGAERRRVRVIKYRGQKYRGGFHDFTIMGDGVH
CCCHHHHHHHHHHHHHHHEEEEECCCCCCCCHHEEEEEEECCCCCCCCCCEEEEECCCHH
VFPRLVAAEHRGDYPRLQLSSGIKEMDALLGGGIETGSSTLILGPAGTGKSLITMIFAAA
HHHHHHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
AVARGEKAALFIFDEELGLLFERMNNIGIDLKALQATGNLLIEQVDAAELSPGEFSHRVR
HHHCCCCEEEEEEEHHHHHHHHHHHCCCCEEEEHHHHHHHHHEECCCCCCCCHHHHHHHH
RCVDEGDIKTVVIDSINGYQAAMPEENALVLHMHELLLYLNRKGAATFMTVAQHGLVGDM
HHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCC
QAPVDITYLADTVILLRYFEALGKVRRAISIIKKRTGSHESTIREYRISKRGMTIGEPLD
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
AFQGVLRGVPTYLGASNPLLKDDNL
HHHHHHHCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRGHFLSTSNALISAKAATGIEGLDDILAGGLSRSHVFLLEGEPGTGKTTVALHFLLAGA
CCCCEECCCCCEEEEHHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCC
RAGERSLYITLSETERELRQGAASHGWELNENIEIFELTPPESLLNAEHHQSLLYSSDLE
CCCCCEEEEEEHHHHHHHHCCHHHCCCCCCCCEEEEEECCCHHHHCCHHHHHHHHHCCCC
LGEATKQIFEVVERFKPTRVVLDSLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
DLTTESLDKTVHSVAHGVIRLEELTPNYGAERRRVRVIKYRGQKYRGGFHDFTIMGDGVH
CCCHHHHHHHHHHHHHHHEEEEECCCCCCCCHHEEEEEEECCCCCCCCCCEEEEECCCHH
VFPRLVAAEHRGDYPRLQLSSGIKEMDALLGGGIETGSSTLILGPAGTGKSLITMIFAAA
HHHHHHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
AVARGEKAALFIFDEELGLLFERMNNIGIDLKALQATGNLLIEQVDAAELSPGEFSHRVR
HHHCCCCEEEEEEEHHHHHHHHHHHCCCCEEEEHHHHHHHHHEECCCCCCCCHHHHHHHH
RCVDEGDIKTVVIDSINGYQAAMPEENALVLHMHELLLYLNRKGAATFMTVAQHGLVGDM
HHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCC
QAPVDITYLADTVILLRYFEALGKVRRAISIIKKRTGSHESTIREYRISKRGMTIGEPLD
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHH
AFQGVLRGVPTYLGASNPLLKDDNL
HHHHHHHCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]