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The map label for this gene is ltrA [H]

Identifier: 77458830

GI number: 77458830

Start: 2981928

End: 2982836

Strand: Reverse

Name: ltrA [H]

Synonym: Pfl01_2605

Alternate gene names: 77458830

Gene position: 2982836-2981928 (Counterclockwise)

Preceding gene: 77458833

Following gene: 77458829

Centisome position: 46.33

GC content: 60.84

Gene sequence:

>909_bases
ATGCAAGACCTCAACGATCTCTACTATTTCGCCAAAGTGGTGGAGGCCGGCGGATTCGCCGCAGCCGGCCGCTTGCTCGG
CATACCCAAGTCACGCCTTTCGCGGCGCATCGCCGAGCTGGAAGAGCGCCTCGGCGCACGTTTGCTGCAACGCACCACTC
GACAACTGAAGCTGACGGCGGTCGGCGAACGCTATTTGCGTCACTGTCAGGCAATGCTGCTGGAAGCGGAAATGGCCGAC
GAGACGGTGGCCAGCATGTCCAGCGAGCCCCGTGGACGCTTGCGGGTTTCAAGCCCGACGGGGCTGGCTCATGAAATGCT
GCCGGTGGTGATCAGCAATTTCCTTGGCAAATACCCCCAGGTGCAACTGGAAGTCACCCTGATCAATCGCCGGGTCGATC
TGATTACCGAAGGCATCGACGTGGCGCTACGCGTGCGCGAACACGGTGATGAAGAACCGATGCTGGTGACCCGCCGCCTG
CGTCAGGCGCAGATGGTGGTGGTCGCAAGCCCTTCCTTTGTCCAGGGTCTGGAAATCAATCATCCGCAGGACTTGAAAAA
CCTGCCGGTGCTGGGCGCTCTGGAAGCCGATCGCATGGTGCATGTGCGCCTGCTCGATCAGCACGGCAAGAGTTGTGATC
TGGCACTGGAAGCCCGGCTGGGGATCGACGATTTCATCGTGCGCAAGGCGTGTGTGCTGGCCGGCCAGGGTTTCACTCTG
TTGCCGATGATGTATTGCGAAACGGAACTGAACAACGGCACGCTGGTGCAATTGTTGCCGGACTGGTCACTGCCCGGTGG
CTGGCTGCAAGCGGTGTATCCGCATCGGCGCGGGGTGATGCCGGCGGTGCGCGCGTGGATCGATCATCTGGTCGAATCGT
TCAATGCCTGTGGAGAACGGCTGCTATGA

Upstream 100 bases:

>100_bases
TGGCGACGGAATGGAGACAATCCTACCGACGAAACCAATAGCTGATTAGACGGCAACAATGCGATAGTTTGTCCCACTGA
TAGAACAGTCGGATTTCTCC

Downstream 100 bases:

>100_bases
AACAAGGAAAGATGAGCGAGCAGGATGTCGCGGACTTCTGCCTGGCCCTGCCCGGCGCCCGGGAAGACTACAAATGGGGT
GGCGTGCGGGTGTTTTCGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQDLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVGERYLRHCQAMLLEAEMAD
ETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQVQLEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRL
RQAQMVVVASPSFVQGLEINHPQDLKNLPVLGALEADRMVHVRLLDQHGKSCDLALEARLGIDDFIVRKACVLAGQGFTL
LPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPHRRGVMPAVRAWIDHLVESFNACGERLL

Sequences:

>Translated_302_residues
MQDLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVGERYLRHCQAMLLEAEMAD
ETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQVQLEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRL
RQAQMVVVASPSFVQGLEINHPQDLKNLPVLGALEADRMVHVRLLDQHGKSCDLALEARLGIDDFIVRKACVLAGQGFTL
LPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPHRRGVMPAVRAWIDHLVESFNACGERLL
>Mature_302_residues
MQDLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTAVGERYLRHCQAMLLEAEMAD
ETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQVQLEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRL
RQAQMVVVASPSFVQGLEINHPQDLKNLPVLGALEADRMVHVRLLDQHGKSCDLALEARLGIDDFIVRKACVLAGQGFTL
LPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPHRRGVMPAVRAWIDHLVESFNACGERLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=32.6530612244898, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=30.2325581395349, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=32.6530612244898, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI145693193, Length=281, Percent_Identity=28.4697508896797, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=26.8965517241379, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=26.4214046822742, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789440, Length=273, Percent_Identity=25.6410256410256, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082132, Length=299, Percent_Identity=25.752508361204, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790011, Length=181, Percent_Identity=25.9668508287293, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787879, Length=308, Percent_Identity=26.9480519480519, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=125, Percent_Identity=28.8, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=28.735632183908, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787806, Length=125, Percent_Identity=32, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI157672245, Length=118, Percent_Identity=30.5084745762712, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33792; Mature: 33792

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTA
CCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
VGERYLRHCQAMLLEAEMADETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
VQLEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRLRQAQMVVVASPSFVQGLEIN
EEEEEEEEHHHHHHHHCCHHHEEEEHHCCCCCHHHHHHHHHHHEEEEEECCCHHCCCCCC
HPQDLKNLPVLGALEADRMVHVRLLDQHGKSCDLALEARLGIDDFIVRKACVLAGQGFTL
CCCCHHCCCCEEECCCCCEEEEEEHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCHH
LPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPHRRGVMPAVRAWIDHLVESFNACGER
HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
LL
CC
>Mature Secondary Structure
MQDLNDLYYFAKVVEAGGFAAAGRLLGIPKSRLSRRIAELEERLGARLLQRTTRQLKLTA
CCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
VGERYLRHCQAMLLEAEMADETVASMSSEPRGRLRVSSPTGLAHEMLPVVISNFLGKYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC
VQLEVTLINRRVDLITEGIDVALRVREHGDEEPMLVTRRLRQAQMVVVASPSFVQGLEIN
EEEEEEEEHHHHHHHHCCHHHEEEEHHCCCCCHHHHHHHHHHHEEEEEECCCHHCCCCCC
HPQDLKNLPVLGALEADRMVHVRLLDQHGKSCDLALEARLGIDDFIVRKACVLAGQGFTL
CCCCHHCCCCEEECCCCCEEEEEEHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCHH
LPMMYCETELNNGTLVQLLPDWSLPGGWLQAVYPHRRGVMPAVRAWIDHLVESFNACGER
HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
LL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]