| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is xanP [H]
Identifier: 77458798
GI number: 77458798
Start: 2949196
End: 2950662
Strand: Reverse
Name: xanP [H]
Synonym: Pfl01_2573
Alternate gene names: 77458798
Gene position: 2950662-2949196 (Counterclockwise)
Preceding gene: 77458799
Following gene: 77458797
Centisome position: 45.83
GC content: 62.3
Gene sequence:
>1467_bases ATGACCGTCTCTGAAAAAGCCCCGCGCAACAACGATCTGATCTACGGCCTCAACGACCGTCCGCACTTCACCGCAACGGT GTTTGCCGCCCTGCAACATGTGCTGGCCAGCTTCGTCGGCATCATCACCCCGACCCTGATCATGGGCGGTGCCCTCGGCC TGCAAAGTGAAATCCCGTACCTGATCAGCATGGCGCTGTTCGTCTCGGGCCTCGGCACCTTCGTTCAGGCCAAGCGCTTC GGCCCGGTCGGTTCGGGGCTGCTGTGCCTGCAAGGCACCAGTTTTTCCTTTATCAGCGTGATTCTCAGCGCCGGTTTCAT GGTCAAGGCCCGGGGCGGCGGCACCGATGAGATTCTGTCGACGATCTTCGGCGTATGCTTCTTTGCCGCCTTCATCGAAG TGGTGCTGAGCCAGTTCATCGGCAAATTGCGCATGCTGATCACCCCGGTGGTGACCGGCACCATCATTACTCTGATGGGC CTGTCGCTGATCAAGGTGGCGATGACCGACATTGCCGGCGGCTTCGGCGCGGCGGATCTGGGCGCGGCCAGCCATGTGTT CCTGGCGGCGCTGGTGCTGGGCACCATTGTGGTGTTGAACCGGGTTGACGTGCCGTTCCTGCGCCTGGGGGCGATTGTCA TCGGCCTGACCCTCGGCTACGTGGTGGCGTGGCTGATGGGCACCGTTGATTTCGCCAACCTGCCCGAAGTGCCGGTGGTC AGCGTGCCGGTGCCGTTCAAATACGGTTTCAACTTTGATTGGGTGGCGTTCGTGCCGGTAGCGGTGATTTTCCTGGTGTC GCCGCTGGAGGCTGCCGGTGACCTGACCGCCAACTCGATGATTTCCCGGCAACCGGTGAAAGGCCCGCTGTACATCCGCC GGATCAAGTCCGGGCTGCTCGCCGATGGTCTCAACTCGGCCATGGCCGCCGTGTTCAACAGCATGCCGATGGTGACTTTC GCCCAGAACAACGGGGTGATACAGCTCACCGGCGTGGCCAGCCGCTACGTGGCGTTCTTCATCGCCGGCCTGCTGGTGCT GCTGGGGCTGTTCCCGATGATCGGCGCGGTGCTGCAACTGATGCCGAAACCGGTACTCGGCGGCGCAGAGCTGGTGATGT TCGGCACCGTGGCCGTCGCCGGGATCAAGATCCTCGCCGAGGCCGGCCTGCATCGGCGCAACATGCTCATCGTGGCGATT TCCGTGGGCATGGGCCTGGGCATCGCCGCCGTGCCGGAAGTGCTGCGTGAACTGCCGCAGGCGCTGCGCAACATCTTCGA ATCGCCGATCACCGTCGGTGCGCTGTGCGCCATCGTGCTGAATATCTTCCTGCCGGAAGAATTCATCGAACTGGAAGAAG ATGACTTCGACCCGGAAGCCTCTATCCTTCAGGTCATGGAAAACCCCGACCTGCCGGCCAAAGCTGAACCCGCAACCAAG GCCGCTGTCGCACAGTTGAACCGTTGA
Upstream 100 bases:
>100_bases CAGAGCGTGGGAACGATCATGCGTTGCCCTCGCCCCTCGCTTACGGCATCCTGCGCACCCATTTTCCGACCCGGCCCCGC ATTGCGGCACGCAAACCACC
Downstream 100 bases:
>100_bases TCCTGTCCGCTCGATGAAAAAAGGGCTGATACCGGCGACGGTTCAGCCCTTTTTCAATGAGAGAGCATCAATGCGCCGTA TCCAAGCCGTCATCCTGTCC
Product: xanthine/uracil permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MTVSEKAPRNNDLIYGLNDRPHFTATVFAALQHVLASFVGIITPTLIMGGALGLQSEIPYLISMALFVSGLGTFVQAKRF GPVGSGLLCLQGTSFSFISVILSAGFMVKARGGGTDEILSTIFGVCFFAAFIEVVLSQFIGKLRMLITPVVTGTIITLMG LSLIKVAMTDIAGGFGAADLGAASHVFLAALVLGTIVVLNRVDVPFLRLGAIVIGLTLGYVVAWLMGTVDFANLPEVPVV SVPVPFKYGFNFDWVAFVPVAVIFLVSPLEAAGDLTANSMISRQPVKGPLYIRRIKSGLLADGLNSAMAAVFNSMPMVTF AQNNGVIQLTGVASRYVAFFIAGLLVLLGLFPMIGAVLQLMPKPVLGGAELVMFGTVAVAGIKILAEAGLHRRNMLIVAI SVGMGLGIAAVPEVLRELPQALRNIFESPITVGALCAIVLNIFLPEEFIELEEDDFDPEASILQVMENPDLPAKAEPATK AAVAQLNR
Sequences:
>Translated_488_residues MTVSEKAPRNNDLIYGLNDRPHFTATVFAALQHVLASFVGIITPTLIMGGALGLQSEIPYLISMALFVSGLGTFVQAKRF GPVGSGLLCLQGTSFSFISVILSAGFMVKARGGGTDEILSTIFGVCFFAAFIEVVLSQFIGKLRMLITPVVTGTIITLMG LSLIKVAMTDIAGGFGAADLGAASHVFLAALVLGTIVVLNRVDVPFLRLGAIVIGLTLGYVVAWLMGTVDFANLPEVPVV SVPVPFKYGFNFDWVAFVPVAVIFLVSPLEAAGDLTANSMISRQPVKGPLYIRRIKSGLLADGLNSAMAAVFNSMPMVTF AQNNGVIQLTGVASRYVAFFIAGLLVLLGLFPMIGAVLQLMPKPVLGGAELVMFGTVAVAGIKILAEAGLHRRNMLIVAI SVGMGLGIAAVPEVLRELPQALRNIFESPITVGALCAIVLNIFLPEEFIELEEDDFDPEASILQVMENPDLPAKAEPATK AAVAQLNR >Mature_487_residues TVSEKAPRNNDLIYGLNDRPHFTATVFAALQHVLASFVGIITPTLIMGGALGLQSEIPYLISMALFVSGLGTFVQAKRFG PVGSGLLCLQGTSFSFISVILSAGFMVKARGGGTDEILSTIFGVCFFAAFIEVVLSQFIGKLRMLITPVVTGTIITLMGL SLIKVAMTDIAGGFGAADLGAASHVFLAALVLGTIVVLNRVDVPFLRLGAIVIGLTLGYVVAWLMGTVDFANLPEVPVVS VPVPFKYGFNFDWVAFVPVAVIFLVSPLEAAGDLTANSMISRQPVKGPLYIRRIKSGLLADGLNSAMAAVFNSMPMVTFA QNNGVIQLTGVASRYVAFFIAGLLVLLGLFPMIGAVLQLMPKPVLGGAELVMFGTVAVAGIKILAEAGLHRRNMLIVAIS VGMGLGIAAVPEVLRELPQALRNIFESPITVGALCAIVLNIFLPEEFIELEEDDFDPEASILQVMENPDLPAKAEPATKA AVAQLNR
Specific function: Specific, proton motive force-dependent high-affinity transporter for xanthine [H]
COG id: COG2233
COG function: function code F; Xanthine/uracil permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]
Homologues:
Organism=Homo sapiens, GI44680148, Length=549, Percent_Identity=24.9544626593807, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI40316845, Length=549, Percent_Identity=24.9544626593807, Blast_Score=89, Evalue=1e-17, Organism=Escherichia coli, GI1790087, Length=444, Percent_Identity=45.4954954954955, Blast_Score=394, Evalue=1e-111, Organism=Escherichia coli, GI87082178, Length=450, Percent_Identity=46.4444444444444, Blast_Score=378, Evalue=1e-106, Organism=Escherichia coli, GI87082181, Length=419, Percent_Identity=32.2195704057279, Blast_Score=182, Evalue=4e-47, Organism=Escherichia coli, GI1788843, Length=462, Percent_Identity=27.0562770562771, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI87081818, Length=451, Percent_Identity=25.0554323725055, Blast_Score=77, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17558856, Length=486, Percent_Identity=25.1028806584362, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17541904, Length=481, Percent_Identity=22.6611226611227, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17542262, Length=395, Percent_Identity=24.5569620253165, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006042 - InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 51508; Mature: 51377
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS01116 XANTH_URACIL_PERMASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVSEKAPRNNDLIYGLNDRPHFTATVFAALQHVLASFVGIITPTLIMGGALGLQSEIPY CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LISMALFVSGLGTFVQAKRFGPVGSGLLCLQGTSFSFISVILSAGFMVKARGGGTDEILS HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCHHHHHH TIFGVCFFAAFIEVVLSQFIGKLRMLITPVVTGTIITLMGLSLIKVAMTDIAGGFGAADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH GAASHVFLAALVLGTIVVLNRVDVPFLRLGAIVIGLTLGYVVAWLMGTVDFANLPEVPVV HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE SVPVPFKYGFNFDWVAFVPVAVIFLVSPLEAAGDLTANSMISRQPVKGPLYIRRIKSGLL ECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHH ADGLNSAMAAVFNSMPMVTFAQNNGVIQLTGVASRYVAFFIAGLLVLLGLFPMIGAVLQL HHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MPKPVLGGAELVMFGTVAVAGIKILAEAGLHRRNMLIVAISVGMGLGIAAVPEVLRELPQ CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH ALRNIFESPITVGALCAIVLNIFLPEEFIELEEDDFDPEASILQVMENPDLPAKAEPATK HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHH AAVAQLNR HHHHHCCC >Mature Secondary Structure TVSEKAPRNNDLIYGLNDRPHFTATVFAALQHVLASFVGIITPTLIMGGALGLQSEIPY CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LISMALFVSGLGTFVQAKRFGPVGSGLLCLQGTSFSFISVILSAGFMVKARGGGTDEILS HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCHHHHHH TIFGVCFFAAFIEVVLSQFIGKLRMLITPVVTGTIITLMGLSLIKVAMTDIAGGFGAADL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH GAASHVFLAALVLGTIVVLNRVDVPFLRLGAIVIGLTLGYVVAWLMGTVDFANLPEVPVV HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE SVPVPFKYGFNFDWVAFVPVAVIFLVSPLEAAGDLTANSMISRQPVKGPLYIRRIKSGLL ECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHH ADGLNSAMAAVFNSMPMVTFAQNNGVIQLTGVASRYVAFFIAGLLVLLGLFPMIGAVLQL HHHHHHHHHHHHCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MPKPVLGGAELVMFGTVAVAGIKILAEAGLHRRNMLIVAISVGMGLGIAAVPEVLRELPQ CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH ALRNIFESPITVGALCAIVLNIFLPEEFIELEEDDFDPEASILQVMENPDLPAKAEPATK HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHH AAVAQLNR HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]