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The map label for this gene is ydcR [H]

Identifier: 77458754

GI number: 77458754

Start: 2891416

End: 2892879

Strand: Reverse

Name: ydcR [H]

Synonym: Pfl01_2529

Alternate gene names: 77458754

Gene position: 2892879-2891416 (Counterclockwise)

Preceding gene: 77458755

Following gene: 77458744

Centisome position: 44.93

GC content: 63.39

Gene sequence:

>1464_bases
GTGAGGGGGCTTTTCCCTGACACTCTACACATTCAACCAGCACCAAGGCCCCCGATGAAACGCTACGAAAAATTCGCCGA
CGACATCGCTGAACTGATCCGCTCCGGCGTCCTCGGCCCCGGTCAACGGGTGCCGTCGGTGCGCTACGCAAGCCAGACCT
ACGGCGTCAGCCCGTCCACGGTATTCCAGGCCTACTACCTGCTGGAACGTCGCGGCCTGATCCGTGCCCGCCCGCGTTCC
GGCTATTTCGTCAACACCCACGCGCCGAGCCCGTTCTCGGAGCCGGTGATCAGCAGTCAGGTCAACGAGTCCACCAAGGT
CGACGTCAGCGAGCTGGTGTTCTCGGTACTCGAGTCGATCAAAGATCCGAGCACCGTGCCGTTCGGCTCGGCATTCCCCA
GCCCGACCCTGTTCCCCCTGCAACGCCTGTCCCGCTCGCTGGCCAGCGCCGCACGGGAGATGGACCCGCGCATGGTGGTC
ACCGACATGTCGCCGGGCAACCCGCAACTGCGTCGGCAGATCGCCCTGCGCTACATGGTCGGCGGCCTGATGCTGCCGAT
GGAAGAACTGCTGATCACCAACGGCGCCCTCGAAGCGCTCAACCTGTGCCTGCAAGCGGTGACCGAACCCGGCGATCTGG
TGGCCATCGAAGCCCCGGCGTTTTACGCCAGCCTGCAAGTGCTCGAACGCCTGAAACTCAAAGCCGTGGAAATCCCCGTT
CACCCGCGCGACGGCATCGACCTCGGCGTGCTCGCCCAGACACTGGAACGACACCCGATCAAGGCCTGCTGGTGCATGAC
CAGTTTCCAGAACCCGATGGGCGCGACCATGCCCGAGGCCAAGAAACAGGAACTGGTGGAACTGCTGAAACAGCACCAGG
TGCCATTGATCGAAGACGACGTCTACGCCGAACTCTATTACGGCCAGCAGGCGCCGAAACCGGCCAAGGCCTTCGACACC
GAAGGTCTGGTGATGCATTGCGGCTCGTTCGCCAAGAGTCTGGCCCCCGGCTATCGCATCGGCTGGGTCGCCGCCGGGCG
CTACGCGCAAAAGATCGAACGACTGAAACTGATGACCTCACTCTGTGCCTCGATGCCGGCCCAAGCGGCCATCGCCGACT
ACCTGCAACACGGTGGCTACGACCGCCACCTGCGCAAATTGCGCTACGCCCTCGAAGAACAGCAAAGCGCGATGCTCGCG
GCCATCGCCCGTTACTTCCCGGCGCAGACGCGCGTGAGCCAACCGGCCGGCGGCTACTTCCTGTGGCTGGAACTGCCACC
GCAGATGGATTCGTTGAAGTTGTTTCAGATGGCGCTGGCGCAGGGGATCAGCATCGCGCCGGGGCCGATTTTTTCGCCGA
CCCAGCGCTTCAGAAATTGCATCCGGTTGAACTACGGCAGCCCGTGGACCGAGGATGCGGAAAAGGCCATGGAGACGCTG
GGGCGGATTGTGCGATCGTTCTGA

Upstream 100 bases:

>100_bases
TCAGTTGCTTGCAAACCCGAGTTCGACTCCGGACTTTCAAGTCGGCGTAACTCGAACAAACAACTCGTTCAGTCCCCTCT
CCCTCCGGGAGAGGGCTAGG

Downstream 100 bases:

>100_bases
ACAGCCACTCAACTGAACAGTTCAGCGCTATCTGTATATCCCGGGTCGGGTGTCGGGATCTGTCCTCCTGCAATCAGCAC
TGCGCCGGATTTGAGCAGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MRGLFPDTLHIQPAPRPPMKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRARPRS
GYFVNTHAPSPFSEPVISSQVNESTKVDVSELVFSVLESIKDPSTVPFGSAFPSPTLFPLQRLSRSLASAAREMDPRMVV
TDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYASLQVLERLKLKAVEIPV
HPRDGIDLGVLAQTLERHPIKACWCMTSFQNPMGATMPEAKKQELVELLKQHQVPLIEDDVYAELYYGQQAPKPAKAFDT
EGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLA
AIARYFPAQTRVSQPAGGYFLWLELPPQMDSLKLFQMALAQGISIAPGPIFSPTQRFRNCIRLNYGSPWTEDAEKAMETL
GRIVRSF

Sequences:

>Translated_487_residues
MRGLFPDTLHIQPAPRPPMKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRARPRS
GYFVNTHAPSPFSEPVISSQVNESTKVDVSELVFSVLESIKDPSTVPFGSAFPSPTLFPLQRLSRSLASAAREMDPRMVV
TDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYASLQVLERLKLKAVEIPV
HPRDGIDLGVLAQTLERHPIKACWCMTSFQNPMGATMPEAKKQELVELLKQHQVPLIEDDVYAELYYGQQAPKPAKAFDT
EGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLA
AIARYFPAQTRVSQPAGGYFLWLELPPQMDSLKLFQMALAQGISIAPGPIFSPTQRFRNCIRLNYGSPWTEDAEKAMETL
GRIVRSF
>Mature_487_residues
MRGLFPDTLHIQPAPRPPMKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRARPRS
GYFVNTHAPSPFSEPVISSQVNESTKVDVSELVFSVLESIKDPSTVPFGSAFPSPTLFPLQRLSRSLASAAREMDPRMVV
TDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYASLQVLERLKLKAVEIPV
HPRDGIDLGVLAQTLERHPIKACWCMTSFQNPMGATMPEAKKQELVELLKQHQVPLIEDDVYAELYYGQQAPKPAKAFDT
EGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLA
AIARYFPAQTRVSQPAGGYFLWLELPPQMDSLKLFQMALAQGISIAPGPIFSPTQRFRNCIRLNYGSPWTEDAEKAMETL
GRIVRSF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=394, Percent_Identity=23.6040609137056, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI33469970, Length=394, Percent_Identity=23.6040609137056, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4507369, Length=176, Percent_Identity=25, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1787710, Length=467, Percent_Identity=48.1798715203426, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1790797, Length=466, Percent_Identity=35.8369098712446, Blast_Score=311, Evalue=7e-86,
Organism=Saccharomyces cerevisiae, GI6321000, Length=301, Percent_Identity=22.5913621262458, Blast_Score=87, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6321929, Length=367, Percent_Identity=20.708446866485, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321236, Length=346, Percent_Identity=23.121387283237, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356535, Length=333, Percent_Identity=22.2222222222222, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54160; Mature: 54160

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLFPDTLHIQPAPRPPMKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPST
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHH
VFQAYYLLERRGLIRARPRSGYFVNTHAPSPFSEPVISSQVNESTKVDVSELVFSVLESI
HHHHHHHHHHCCCCEECCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
KDPSTVPFGSAFPSPTLFPLQRLSRSLASAAREMDPRMVVTDMSPGNPQLRRQIALRYMV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
GGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYASLQVLERLKLKAVEIPV
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHEECCC
HPRDGIDLGVLAQTLERHPIKACWCMTSFQNPMGATMPEAKKQELVELLKQHQVPLIEDD
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCH
VYAELYYGQQAPKPAKAFDTEGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTS
HHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
LCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLAAIARYFPAQTRVSQPAGGYF
HHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEE
LWLELPPQMDSLKLFQMALAQGISIAPGPIFSPTQRFRNCIRLNYGSPWTEDAEKAMETL
EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GRIVRSF
HHHHHCC
>Mature Secondary Structure
MRGLFPDTLHIQPAPRPPMKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPST
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHH
VFQAYYLLERRGLIRARPRSGYFVNTHAPSPFSEPVISSQVNESTKVDVSELVFSVLESI
HHHHHHHHHHCCCCEECCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
KDPSTVPFGSAFPSPTLFPLQRLSRSLASAAREMDPRMVVTDMSPGNPQLRRQIALRYMV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
GGLMLPMEELLITNGALEALNLCLQAVTEPGDLVAIEAPAFYASLQVLERLKLKAVEIPV
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHEECCC
HPRDGIDLGVLAQTLERHPIKACWCMTSFQNPMGATMPEAKKQELVELLKQHQVPLIEDD
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCH
VYAELYYGQQAPKPAKAFDTEGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTS
HHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
LCASMPAQAAIADYLQHGGYDRHLRKLRYALEEQQSAMLAAIARYFPAQTRVSQPAGGYF
HHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEE
LWLELPPQMDSLKLFQMALAQGISIAPGPIFSPTQRFRNCIRLNYGSPWTEDAEKAMETL
EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GRIVRSF
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]