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The map label for this gene is ybfI [H]

Identifier: 77458615

GI number: 77458615

Start: 2748193

End: 2749029

Strand: Direct

Name: ybfI [H]

Synonym: Pfl01_2388

Alternate gene names: 77458615

Gene position: 2748193-2749029 (Clockwise)

Preceding gene: 77458614

Following gene: 77458616

Centisome position: 42.68

GC content: 64.99

Gene sequence:

>837_bases
GTGGACAAACGCAACTGGATCGAGCTGTCCCAGGATGCCGACACCGGGATCGAGTCGATTCGTGCCCACTTTCAGGGACA
TGCCTACGATCCGCACTGGCATGACAGCTTTCTGGTGGGCGTCACCGAGCAGGGCGTGCAGCAGTTTCATTGCCGGCGCG
TGCGCCATCTGAGTACGCCGGGCAAGATTTTCATGCTGGAGCCGGGGGAGATCCACGACGGGCACGCGCCGACGGAGGAG
GGTTTCACCTATTCCATGCTCTACCTCGACCCGCACTGGCTGGAGCGTGAATTGCGCGTGCTGTTCGAACACGCGCCGGA
CAACAGCCAGCTCGGGTTCACCGATACCCTGAGCCAGGATTCGCGCCTGTCCACGGCCATCAATCAGGCCTTCAACGCCC
TGCATCAAGGCGACTTGCGCATCGTGCGCCAGACCGCCGTCGACACCTTGCTCGGTGCGCTGACGTCCCACCTTGACTGG
CGCAAGCGCCAGCCGTTCGATCCGCGCCTGCCACGCGTGGCCCAGGTGGCGCGGGACTATCTGCATGCTCATGCCTTTGA
GGACATCGGGCTGGACGACGTAGCCCAGGCCTGCGGGGTCGATCGCTTTCGACTGACCCGTGCGTTCAAGGCCGCTTTCG
GACTGGCGCCGCATGCCTACCTGATCCAGCTGCGGCTGGCCCGCGCCCGCCAATTGCTGGCGCGCGGCGAAACACCCGCC
ACCGTCGCCAGCGCCCTCGGTTTCGCCGATCAGAGCCATCTCGGGCGCTGGTTCCGCCGTGCCTATCACCTGACGCCGGC
GGACTACCGCAAGCGCTGCTCAAACCTTCCAGACTGA

Upstream 100 bases:

>100_bases
GTAGTCTGCCTGGCTCACGTGCACAAATGTTCTAAACCCATCGGCAAAGTCGCGGTAACGTAGACGTCCTCAACGACCAA
CACTGCCTTCGGAGCCTTGC

Downstream 100 bases:

>100_bases
ACCCCGCGCAACCGCGACCATGACCTCCTGTTTTGATTCGGGAGCCCTGTCATGGAATCGTTGTTGCCTTTTCTGCTGTT
TTCCTTCGTCGCCTCGATCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDKRNWIELSQDADTGIESIRAHFQGHAYDPHWHDSFLVGVTEQGVQQFHCRRVRHLSTPGKIFMLEPGEIHDGHAPTEE
GFTYSMLYLDPHWLERELRVLFEHAPDNSQLGFTDTLSQDSRLSTAINQAFNALHQGDLRIVRQTAVDTLLGALTSHLDW
RKRQPFDPRLPRVAQVARDYLHAHAFEDIGLDDVAQACGVDRFRLTRAFKAAFGLAPHAYLIQLRLARARQLLARGETPA
TVASALGFADQSHLGRWFRRAYHLTPADYRKRCSNLPD

Sequences:

>Translated_278_residues
MDKRNWIELSQDADTGIESIRAHFQGHAYDPHWHDSFLVGVTEQGVQQFHCRRVRHLSTPGKIFMLEPGEIHDGHAPTEE
GFTYSMLYLDPHWLERELRVLFEHAPDNSQLGFTDTLSQDSRLSTAINQAFNALHQGDLRIVRQTAVDTLLGALTSHLDW
RKRQPFDPRLPRVAQVARDYLHAHAFEDIGLDDVAQACGVDRFRLTRAFKAAFGLAPHAYLIQLRLARARQLLARGETPA
TVASALGFADQSHLGRWFRRAYHLTPADYRKRCSNLPD
>Mature_278_residues
MDKRNWIELSQDADTGIESIRAHFQGHAYDPHWHDSFLVGVTEQGVQQFHCRRVRHLSTPGKIFMLEPGEIHDGHAPTEE
GFTYSMLYLDPHWLERELRVLFEHAPDNSQLGFTDTLSQDSRLSTAINQAFNALHQGDLRIVRQTAVDTLLGALTSHLDW
RKRQPFDPRLPRVAQVARDYLHAHAFEDIGLDDVAQACGVDRFRLTRAFKAAFGLAPHAYLIQLRLARARQLLARGETPA
TVASALGFADQSHLGRWFRRAYHLTPADYRKRCSNLPD

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31736; Mature: 31736

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRNWIELSQDADTGIESIRAHFQGHAYDPHWHDSFLVGVTEQGVQQFHCRRVRHLSTP
CCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
GKIFMLEPGEIHDGHAPTEEGFTYSMLYLDPHWLERELRVLFEHAPDNSQLGFTDTLSQD
CCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SRLSTAINQAFNALHQGDLRIVRQTAVDTLLGALTSHLDWRKRQPFDPRLPRVAQVARDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LHAHAFEDIGLDDVAQACGVDRFRLTRAFKAAFGLAPHAYLIQLRLARARQLLARGETPA
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHH
TVASALGFADQSHLGRWFRRAYHLTPADYRKRCSNLPD
HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MDKRNWIELSQDADTGIESIRAHFQGHAYDPHWHDSFLVGVTEQGVQQFHCRRVRHLSTP
CCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
GKIFMLEPGEIHDGHAPTEEGFTYSMLYLDPHWLERELRVLFEHAPDNSQLGFTDTLSQD
CCEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SRLSTAINQAFNALHQGDLRIVRQTAVDTLLGALTSHLDWRKRQPFDPRLPRVAQVARDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LHAHAFEDIGLDDVAQACGVDRFRLTRAFKAAFGLAPHAYLIQLRLARARQLLARGETPA
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHH
TVASALGFADQSHLGRWFRRAYHLTPADYRKRCSNLPD
HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]