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The map label for this gene is ycaD [H]

Identifier: 77458611

GI number: 77458611

Start: 2743845

End: 2745155

Strand: Reverse

Name: ycaD [H]

Synonym: Pfl01_2384

Alternate gene names: 77458611

Gene position: 2745155-2743845 (Counterclockwise)

Preceding gene: 77458613

Following gene: 77458607

Centisome position: 42.64

GC content: 65.6

Gene sequence:

>1311_bases
ATGACACCGCGTTTGCTGGCCATGGCGCTGGCGCCCCTGCTCGGGCTGTTCATTGTTGCGCTGGGCAACGGCTTTCTGTC
TTCTTTGACCACCCTGCGTTTGGGCGCTGCCGGCGAATCGGCGACGATGATCGGCATCGTGTCCTCGGCCTATTTCATCG
GCCTGACGCTGGGCGCGATCTTCAACGACCGGCTGATCCTGCGCATCGGCCACATCCGCGCCTACAGCAGCTTCGCCTCG
CTGATCGCCGCGACCATCCTGTTGCAAGGGCTGTTTTATGACACCTGGGGCTGGGTCGTGCTGCGCCTGATCAACGGTTG
GGCCACGGTCGGTGTATTTCTGGTGATCGAGAGCTGGCTGCTGCTGGCCGGTGACGCGAAGATTCGCGGCCGCCTGCTGG
CGCTGTACATGATCGTCCTCTACGGCGCCGGCGTGCTGGGTCAGGCGTTTTTGGGGAAAATCACCGGGCTGGGCGACACC
GCGCCGTTCATGGTCGCCGGCATGCTCGCAACCCTGTCGGTGCTGCCGATCGTGATCCTGCCGCGGGTTTCGCCGCTGCT
GGAACAGGTCGAACCGCTCAAGCCTCGGGCCTTGCTTGGCGTTTCGCCCACCGGGTTGGTCGGCTGCTTCGGCTCCGGCG
TGACCATCGCGGCGATCTACACCCTGCTGCCGCTGTACCTGCAACGCATCGGCCTGAACGTGGGCGAAGTCGGCAGCATG
ATGGCGTGGACGATCCTCGGCGCAATGCTGCTGCAATACCCGGTCGGGCGCTGGTCCGACCGCAAGGATCGCCTGCAAGT
GCTCACCGTGCTCTGCGCCGCGTGCACCGTTCTGTCGCTGGTGATCGTGCTGGTGCCGCTGTCCTCGGCCCTGCTCGCGG
CGATGCTGTTCCTGTTAGGTGGCGGCGTGTTCGCGCTGTACCCGGTTGCGGTCAGCCATGCGGCCGACCGTGCGCCGGTC
GAAACGTTGGTGCCGATGATTCAGGGCATGTTGCTGATCAACTCGCTGGGCTCGGCGATGAGCCCGCTGCTGATCTCGCC
GGCGATGAATGCCCATGGCGAAACCGGCCTGTTCTGGGCCTTCGCGCTGGTCAACCTGGCCATGGTGACGTTCTTCTTCT
GGCGTCGCGGCAAGCGTCCGGTGCCGGCCAATCCGGCACCGTTTGCGGCGGCAGCGACCTTCTCGCCAACCGGCGCAGAG
CTGCGAGTGACCGAGGATCTGCGTCAGGCCGCGCAGGACCATCCGCCGATGGTCGATGCGTTGAGCGGCGAAGCGGCGCC
GGCAACGGGATCGCGCTACGAAGCCAGTTGA

Upstream 100 bases:

>100_bases
CGTCCTGCCCGTTCGGCGGTCGTTTGTCTTCAACACACTTCGGCTTGGCACTCGCATGCGCAGAGGCGCACGTTCCGCTG
TTCGATCACTTGAGGTTTTT

Downstream 100 bases:

>100_bases
GTTTCTGGCAGGCATAAAAAAACCGGTGACTTTCGTCACCGGTTTTTTATTGCCTGCTAATCAGTGTGGAGCCCGAGGAA
TGGTCTTCATCAGGTCTTCA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MTPRLLAMALAPLLGLFIVALGNGFLSSLTTLRLGAAGESATMIGIVSSAYFIGLTLGAIFNDRLILRIGHIRAYSSFAS
LIAATILLQGLFYDTWGWVVLRLINGWATVGVFLVIESWLLLAGDAKIRGRLLALYMIVLYGAGVLGQAFLGKITGLGDT
APFMVAGMLATLSVLPIVILPRVSPLLEQVEPLKPRALLGVSPTGLVGCFGSGVTIAAIYTLLPLYLQRIGLNVGEVGSM
MAWTILGAMLLQYPVGRWSDRKDRLQVLTVLCAACTVLSLVIVLVPLSSALLAAMLFLLGGGVFALYPVAVSHAADRAPV
ETLVPMIQGMLLINSLGSAMSPLLISPAMNAHGETGLFWAFALVNLAMVTFFFWRRGKRPVPANPAPFAAAATFSPTGAE
LRVTEDLRQAAQDHPPMVDALSGEAAPATGSRYEAS

Sequences:

>Translated_436_residues
MTPRLLAMALAPLLGLFIVALGNGFLSSLTTLRLGAAGESATMIGIVSSAYFIGLTLGAIFNDRLILRIGHIRAYSSFAS
LIAATILLQGLFYDTWGWVVLRLINGWATVGVFLVIESWLLLAGDAKIRGRLLALYMIVLYGAGVLGQAFLGKITGLGDT
APFMVAGMLATLSVLPIVILPRVSPLLEQVEPLKPRALLGVSPTGLVGCFGSGVTIAAIYTLLPLYLQRIGLNVGEVGSM
MAWTILGAMLLQYPVGRWSDRKDRLQVLTVLCAACTVLSLVIVLVPLSSALLAAMLFLLGGGVFALYPVAVSHAADRAPV
ETLVPMIQGMLLINSLGSAMSPLLISPAMNAHGETGLFWAFALVNLAMVTFFFWRRGKRPVPANPAPFAAAATFSPTGAE
LRVTEDLRQAAQDHPPMVDALSGEAAPATGSRYEAS
>Mature_435_residues
TPRLLAMALAPLLGLFIVALGNGFLSSLTTLRLGAAGESATMIGIVSSAYFIGLTLGAIFNDRLILRIGHIRAYSSFASL
IAATILLQGLFYDTWGWVVLRLINGWATVGVFLVIESWLLLAGDAKIRGRLLALYMIVLYGAGVLGQAFLGKITGLGDTA
PFMVAGMLATLSVLPIVILPRVSPLLEQVEPLKPRALLGVSPTGLVGCFGSGVTIAAIYTLLPLYLQRIGLNVGEVGSMM
AWTILGAMLLQYPVGRWSDRKDRLQVLTVLCAACTVLSLVIVLVPLSSALLAAMLFLLGGGVFALYPVAVSHAADRAPVE
TLVPMIQGMLLINSLGSAMSPLLISPAMNAHGETGLFWAFALVNLAMVTFFFWRRGKRPVPANPAPFAAAATFSPTGAEL
RVTEDLRQAAQDHPPMVDALSGEAAPATGSRYEAS

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=360, Percent_Identity=31.6666666666667, Blast_Score=151, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 46047; Mature: 45915

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPRLLAMALAPLLGLFIVALGNGFLSSLTTLRLGAAGESATMIGIVSSAYFIGLTLGAI
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
FNDRLILRIGHIRAYSSFASLIAATILLQGLFYDTWGWVVLRLINGWATVGVFLVIESWL
HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAGDAKIRGRLLALYMIVLYGAGVLGQAFLGKITGLGDTAPFMVAGMLATLSVLPIVIL
HHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
PRVSPLLEQVEPLKPRALLGVSPTGLVGCFGSGVTIAAIYTLLPLYLQRIGLNVGEVGSM
HCHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
MAWTILGAMLLQYPVGRWSDRKDRLQVLTVLCAACTVLSLVIVLVPLSSALLAAMLFLLG
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGVFALYPVAVSHAADRAPVETLVPMIQGMLLINSLGSAMSPLLISPAMNAHGETGLFWA
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHH
FALVNLAMVTFFFWRRGKRPVPANPAPFAAAATFSPTGAELRVTEDLRQAAQDHPPMVDA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHCCCCCHHH
LSGEAAPATGSRYEAS
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TPRLLAMALAPLLGLFIVALGNGFLSSLTTLRLGAAGESATMIGIVSSAYFIGLTLGAI
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
FNDRLILRIGHIRAYSSFASLIAATILLQGLFYDTWGWVVLRLINGWATVGVFLVIESWL
HCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAGDAKIRGRLLALYMIVLYGAGVLGQAFLGKITGLGDTAPFMVAGMLATLSVLPIVIL
HHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
PRVSPLLEQVEPLKPRALLGVSPTGLVGCFGSGVTIAAIYTLLPLYLQRIGLNVGEVGSM
HCHHHHHHHCCCCCCCEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
MAWTILGAMLLQYPVGRWSDRKDRLQVLTVLCAACTVLSLVIVLVPLSSALLAAMLFLLG
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGVFALYPVAVSHAADRAPVETLVPMIQGMLLINSLGSAMSPLLISPAMNAHGETGLFWA
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHH
FALVNLAMVTFFFWRRGKRPVPANPAPFAAAATFSPTGAELRVTEDLRQAAQDHPPMVDA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHHHHHHCCCCCHHH
LSGEAAPATGSRYEAS
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA