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The map label for this gene is yhjC [H]

Identifier: 77458595

GI number: 77458595

Start: 2726770

End: 2727711

Strand: Direct

Name: yhjC [H]

Synonym: Pfl01_2368

Alternate gene names: 77458595

Gene position: 2726770-2727711 (Clockwise)

Preceding gene: 77458592

Following gene: 77458597

Centisome position: 42.35

GC content: 63.59

Gene sequence:

>942_bases
ATGGACCGTTTTGACGCGATGCAAGCTTTCGCCCGGGTGGTGGAGGCGGGCAGTTTCACCAAGGCCGCCGAGACCCTGCA
CATGAGCAAGACCACCGTGACCCAGCTTATTCAGCAACTGGAGGCGCGGCTGCGAGTGAAGTTGCTCAACCGCACCACGC
GCAAGGTCAACGCCACGGCGGACGGCGCGGTTTATTACGAGCGGGTGATCAAGTTGCTGGCGGACATGGACGACGCCGAG
ACCAGTCTTCCCGGTGCGGCGGCGCAGCCCAAGGGACGCTTGCGGGTCGATGTGCCCAGCCCCCTGGCCAATCTGATTCT
GGTGCCGGCTCTGCCCGAGTTTTGCGCGCGGTATCCGGAGATCCAGATCGACATGGGCGTCAGCGACCGAATCGTCGACA
TCATCGATGAGAACGTAGATTGCGTGGTGCGCGGGGGCGAGCTGCGGGATCAGTCACTGATGGCCCGGAAAGTGGCGGAT
CTTCAACTTGGCGTGTATGCCGCGCCGAGCTATCTGGCCCGTGCCGGCACCCCGGCGCATCCCCGAGAGCTGGAAGACAG
CCATCACCGAGTAGTCGGTTTCCTCTGGGCGCGCACCGGCAAACCCGTGCCTTACGCCCTGCACAACGAACACGAAGATC
TGCAGATCAAGGGCCGCCATGTGCTGGCCGTCGATGACGGTAATGCCTATCTGTCGGCGGGCCTCGCGGGGCTGGGCGTG
TTGTGGCTGCCCAAGTACATGTCCAAGGCTCACGAGGCGAGCGGTAATCTGGTGCCGCTGTTCGAAGACTGGCGCCTCGA
TCCGATGCCGCTCTATGTCGCCTACCCGCCGAACCGCCACATCAGCCGCAAGCTGCGGGTGTTCATCGACTGGATCGCCG
AGGTAATGGCCCGCCACGCACCGGTCATGGATCGCTCAGGTTCGCCAGCAGCCATTCGGTAA

Upstream 100 bases:

>100_bases
TGGAGCAACTGTAGGGACTTGCCTCGGCGCGATAAACGCGCAACCTTGGCGATCACTGTTTGCAAATACCAAACAATCGA
GCCCCTGTCAGAGGTGGGAT

Downstream 100 bases:

>100_bases
AACTGCGGGCCATCGGATCGTTTTCGCTGTCGCGGTGGGTCAGCAGCGCCCAGTTCGGGCCGCGAATGGTCTCGTCCACC
AAGGGCTGCAACAGCCCGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDRFDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATADGAVYYERVIKLLADMDDAE
TSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPEIQIDMGVSDRIVDIIDENVDCVVRGGELRDQSLMARKVAD
LQLGVYAAPSYLARAGTPAHPRELEDSHHRVVGFLWARTGKPVPYALHNEHEDLQIKGRHVLAVDDGNAYLSAGLAGLGV
LWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWIAEVMARHAPVMDRSGSPAAIR

Sequences:

>Translated_313_residues
MDRFDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATADGAVYYERVIKLLADMDDAE
TSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPEIQIDMGVSDRIVDIIDENVDCVVRGGELRDQSLMARKVAD
LQLGVYAAPSYLARAGTPAHPRELEDSHHRVVGFLWARTGKPVPYALHNEHEDLQIKGRHVLAVDDGNAYLSAGLAGLGV
LWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWIAEVMARHAPVMDRSGSPAAIR
>Mature_313_residues
MDRFDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATADGAVYYERVIKLLADMDDAE
TSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPEIQIDMGVSDRIVDIIDENVDCVVRGGELRDQSLMARKVAD
LQLGVYAAPSYLARAGTPAHPRELEDSHHRVVGFLWARTGKPVPYALHNEHEDLQIKGRHVLAVDDGNAYLSAGLAGLGV
LWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWIAEVMARHAPVMDRSGSPAAIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=33.4448160535117, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=33.2191780821918, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=30.7692307692308, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=29.8245614035088, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=27.2727272727273, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=27.3026315789474, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789440, Length=303, Percent_Identity=26.0726072607261, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=32.03125, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=22.680412371134, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=289, Percent_Identity=24.9134948096886, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=23.9202657807309, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=121, Percent_Identity=30.5785123966942, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34744; Mature: 34744

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGAVYYERVIKLLADMDDAETSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPE
CHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHEECCCCHHHHHHCCC
IQIDMGVSDRIVDIIDENVDCVVRGGELRDQSLMARKVADLQLGVYAAPSYLARAGTPAH
EEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCHHHHHCCCCCC
PRELEDSHHRVVGFLWARTGKPVPYALHNEHEDLQIKGRHVLAVDDGNAYLSAGLAGLGV
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEECCCCEEHHHHHHHHH
LWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWIAEVMARHA
HHHHHHHHHHHHCCCCEEEEHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PVMDRSGSPAAIR
CCCCCCCCCCCCC
>Mature Secondary Structure
MDRFDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLIQQLEARLRVKLLNRTTRKVNATA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGAVYYERVIKLLADMDDAETSLPGAAAQPKGRLRVDVPSPLANLILVPALPEFCARYPE
CHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHEECCCCHHHHHHCCC
IQIDMGVSDRIVDIIDENVDCVVRGGELRDQSLMARKVADLQLGVYAAPSYLARAGTPAH
EEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCHHHHHCCCCCC
PRELEDSHHRVVGFLWARTGKPVPYALHNEHEDLQIKGRHVLAVDDGNAYLSAGLAGLGV
CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEECCCCEEHHHHHHHHH
LWLPKYMSKAHEASGNLVPLFEDWRLDPMPLYVAYPPNRHISRKLRVFIDWIAEVMARHA
HHHHHHHHHHHHCCCCEEEEHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PVMDRSGSPAAIR
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]