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The map label for this gene is xylS3 [H]

Identifier: 77458547

GI number: 77458547

Start: 2676098

End: 2677105

Strand: Direct

Name: xylS3 [H]

Synonym: Pfl01_2320

Alternate gene names: 77458547

Gene position: 2676098-2677105 (Clockwise)

Preceding gene: 77458546

Following gene: 77458548

Centisome position: 41.56

GC content: 60.91

Gene sequence:

>1008_bases
ATGGCGCAAACCGTGACCATCACCATAACGACAAGATCGAGTGCCTTGCCCATGGACAGCCGCCTGCTGAGCGACCGCAG
CAGCGTGTTTCGCCACGCTGACCCGTATGCCGTCTCCGACTATGTGAACCAGCACGTCGGCCAGCATTTCATCGGCCTGT
CCAAAACCACCCACCCGCAAGCCAGCCTCAACCACCGCAAACTCGCCGATCTCGATCTGTGCCGCATCAGCTATGGCGGC
AGCGTTCGCGTAACGTCGCTGGCGCTGGAAACCGTGTATCACCTGCAAGTCCTGCTGCAAGGCAACTGCCTGTGGCGCGG
GCACAAGCGCGAGCATCATCTGGTGCCGGGCGAATTGCTGCTGATCAACCCGGACGATCCGGTGGACCTGACTTATTCCG
ACGATTGCGAGAAGTTCATCCTCAAGGTGCCGGTCAGCGTGCTGGAATCGGTGTGCGACGAACAGCGCTGGCTGCATCCT
GCCGGGGGCATCCGGTTCCTGCGCAATCATTACCGGCTCGACGAACTGGAAGGTTTTACCAGCCTGCTGGGCATGATCTG
CCAGGAAGCCGAAGCCAGTGACCCGTTGCTGCGGGTGCAGGAGCATTATGCGCAGATCGTCGGCAGCAAACTGATCTCGC
TGATGAACACCAACGTCAGCCGTGAATGCCTGAGTTCGCCGAGCGTCAGTTTCGAGCGGATCCTCGACTACATAGAGCGC
AACCTGAAGCAGGATCTGCCCGCCGAACACCTGGCGGCTCAGGCGAACATGAGCCCGCGTTCCCTGTACGCGCTGTTCGA
ACGCCAGCTTGGCGTGACCCCGATGCAGTACATCCGCCAGCGCAAGCTGGAACGCATTCATGCCTGCCTCAACGATCCGA
GCTGTCCGGTGCGCAACCTCACCGAACTGGCGCTCGACTACGGCTTCCTGCACCTCGGGCGTTTCTCCGAAAGCTATCGC
CAGCAGTTCGGCGAATTGCCGTCCGTGACCTTCAAGCGCCGCCACTGA

Upstream 100 bases:

>100_bases
TTGGCCTGAACATATCTGCTCGATGAAACCGTTCGGTCACCGGACACCCGAACCTTCGTCCAATTGCCCGATCTTGTTCG
CCGGCGTACTGTGACCGGTG

Downstream 100 bases:

>100_bases
ATTCCCGCCTCGAAACAATCTGAAGCACCTGCTGCGCCGTCCTGCACAAAACGGATAGCGCTCTGCAGGATTCGGATATT
GCCGCCCGCGTTGCCTCCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MAQTVTITITTRSSALPMDSRLLSDRSSVFRHADPYAVSDYVNQHVGQHFIGLSKTTHPQASLNHRKLADLDLCRISYGG
SVRVTSLALETVYHLQVLLQGNCLWRGHKREHHLVPGELLLINPDDPVDLTYSDDCEKFILKVPVSVLESVCDEQRWLHP
AGGIRFLRNHYRLDELEGFTSLLGMICQEAEASDPLLRVQEHYAQIVGSKLISLMNTNVSRECLSSPSVSFERILDYIER
NLKQDLPAEHLAAQANMSPRSLYALFERQLGVTPMQYIRQRKLERIHACLNDPSCPVRNLTELALDYGFLHLGRFSESYR
QQFGELPSVTFKRRH

Sequences:

>Translated_335_residues
MAQTVTITITTRSSALPMDSRLLSDRSSVFRHADPYAVSDYVNQHVGQHFIGLSKTTHPQASLNHRKLADLDLCRISYGG
SVRVTSLALETVYHLQVLLQGNCLWRGHKREHHLVPGELLLINPDDPVDLTYSDDCEKFILKVPVSVLESVCDEQRWLHP
AGGIRFLRNHYRLDELEGFTSLLGMICQEAEASDPLLRVQEHYAQIVGSKLISLMNTNVSRECLSSPSVSFERILDYIER
NLKQDLPAEHLAAQANMSPRSLYALFERQLGVTPMQYIRQRKLERIHACLNDPSCPVRNLTELALDYGFLHLGRFSESYR
QQFGELPSVTFKRRH
>Mature_334_residues
AQTVTITITTRSSALPMDSRLLSDRSSVFRHADPYAVSDYVNQHVGQHFIGLSKTTHPQASLNHRKLADLDLCRISYGGS
VRVTSLALETVYHLQVLLQGNCLWRGHKREHHLVPGELLLINPDDPVDLTYSDDCEKFILKVPVSVLESVCDEQRWLHPA
GGIRFLRNHYRLDELEGFTSLLGMICQEAEASDPLLRVQEHYAQIVGSKLISLMNTNVSRECLSSPSVSFERILDYIERN
LKQDLPAEHLAAQANMSPRSLYALFERQLGVTPMQYIRQRKLERIHACLNDPSCPVRNLTELALDYGFLHLGRFSESYRQ
QFGELPSVTFKRRH

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=220, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38191; Mature: 38060

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTVTITITTRSSALPMDSRLLSDRSSVFRHADPYAVSDYVNQHVGQHFIGLSKTTHPQ
CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
ASLNHRKLADLDLCRISYGGSVRVTSLALETVYHLQVLLQGNCLWRGHKREHHLVPGELL
CCCCCCHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEE
LINPDDPVDLTYSDDCEKFILKVPVSVLESVCDEQRWLHPAGGIRFLRNHYRLDELEGFT
EECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHH
SLLGMICQEAEASDPLLRVQEHYAQIVGSKLISLMNTNVSRECLSSPSVSFERILDYIER
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHH
NLKQDLPAEHLAAQANMSPRSLYALFERQLGVTPMQYIRQRKLERIHACLNDPSCPVRNL
HHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
TELALDYGFLHLGRFSESYRQQFGELPSVTFKRRH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AQTVTITITTRSSALPMDSRLLSDRSSVFRHADPYAVSDYVNQHVGQHFIGLSKTTHPQ
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
ASLNHRKLADLDLCRISYGGSVRVTSLALETVYHLQVLLQGNCLWRGHKREHHLVPGELL
CCCCCCHHCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEE
LINPDDPVDLTYSDDCEKFILKVPVSVLESVCDEQRWLHPAGGIRFLRNHYRLDELEGFT
EECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHH
SLLGMICQEAEASDPLLRVQEHYAQIVGSKLISLMNTNVSRECLSSPSVSFERILDYIER
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHH
NLKQDLPAEHLAAQANMSPRSLYALFERQLGVTPMQYIRQRKLERIHACLNDPSCPVRNL
HHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
TELALDYGFLHLGRFSESYRQQFGELPSVTFKRRH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]