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The map label for this gene is rhiR [H]

Identifier: 77458474

GI number: 77458474

Start: 2577697

End: 2578416

Strand: Direct

Name: rhiR [H]

Synonym: Pfl01_2247

Alternate gene names: 77458474

Gene position: 2577697-2578416 (Clockwise)

Preceding gene: 77458473

Following gene: 77458475

Centisome position: 40.04

GC content: 65.69

Gene sequence:

>720_bases
GTGAGCTCCGGACCTGCCGAAGCACTCTTGCGCGCCGCCCTCGACATCGAGGCGGCGCCCACGCTGGTGGCGATCCAGAA
GGCCGTTCGCGGTTTCGCCGGGGCCTATGGTTACGATCGGTTCGTCCTGTTCTCCGCCACCTCGGCGTCGGAGGACGTGG
TCGAGCGCATTTATTGGGTGGAAGGCGACTGGTTCGGCGACGGCATCGCTGTCGACGCCCAGACCTACGTTCAGCGCTGC
CCAGTGACTCGCCACCTGTTGGACGCCCGCGAATCGTTCTTCTGGAGCAAGGTGCAGGAGCAGAGCGGCGAACTGTATCG
GCTGGTTCGCGTGCCAAGCGGCCCGGGCGTGCATGGATTGCAGATTCCGGTCTTCGGTCCACAAGGGCTTGAAGGCGCCA
TGAGTCTGGGTGGCGAACAGATCGATGCCTCGGCGCGGGTTCGTCTGGCGCTGGGCATGCTCGCCTCGGTGGCGTTTTTC
TCCGCCCGACGCTTGCTCGAAGCGCCGCTGGACGAGACGGCCGGAAAACTCTCGACCCGCGAGCGCGAAGTGCTGGCGTG
GGTCGCCGCCGGTCGCCGGCAGGCCGACATCGCCGCCACACTCGGCTTGTCCGGGCGCACGGTGGAAAATCACCTGCGTT
CGGCGCGTCGGCATCTGGGCGTGGCCACCACTGCTCAGGCCATCAAAATTGCCATTCGCAAGGGTGAAATAAAGGGGTGA

Upstream 100 bases:

>100_bases
CGCTTCAGGATCGCAAACTGCTGACCGGTGACAGTCCGCTGGCGGGCAACGCACTGGGCAAACTGGCGGCCGCCGCGCTC
CTCAAAGAGGTCACGTCGGG

Downstream 100 bases:

>100_bases
GGTTCTCACTCTGCCGGTGCCGTGCTTGAACGGCGGTGCAAAACTCCTATGATGCAAAGGGCCCGCGCCGGCTGTCTGTA
ACCGGCGCAGCCCTTTACGT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSSGPAEALLRAALDIEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWVEGDWFGDGIAVDAQTYVQRC
PVTRHLLDARESFFWSKVQEQSGELYRLVRVPSGPGVHGLQIPVFGPQGLEGAMSLGGEQIDASARVRLALGMLASVAFF
SARRLLEAPLDETAGKLSTREREVLAWVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEIKG

Sequences:

>Translated_239_residues
MSSGPAEALLRAALDIEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWVEGDWFGDGIAVDAQTYVQRC
PVTRHLLDARESFFWSKVQEQSGELYRLVRVPSGPGVHGLQIPVFGPQGLEGAMSLGGEQIDASARVRLALGMLASVAFF
SARRLLEAPLDETAGKLSTREREVLAWVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEIKG
>Mature_238_residues
SSGPAEALLRAALDIEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWVEGDWFGDGIAVDAQTYVQRCP
VTRHLLDARESFFWSKVQEQSGELYRLVRVPSGPGVHGLQIPVFGPQGLEGAMSLGGEQIDASARVRLALGMLASVAFFS
ARRLLEAPLDETAGKLSTREREVLAWVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEIKG

Specific function: Positive regulator of the rhiABC operon [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 25748; Mature: 25616

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGPAEALLRAALDIEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWV
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC
EGDWFGDGIAVDAQTYVQRCPVTRHLLDARESFFWSKVQEQSGELYRLVRVPSGPGVHGL
CCCEECCCEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE
QIPVFGPQGLEGAMSLGGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTR
EEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EREVLAWVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEIKG
HHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSGPAEALLRAALDIEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWV
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC
EGDWFGDGIAVDAQTYVQRCPVTRHLLDARESFFWSKVQEQSGELYRLVRVPSGPGVHGL
CCCEECCCEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE
QIPVFGPQGLEGAMSLGGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTR
EEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EREVLAWVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEIKG
HHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]