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The map label for this gene is arpC [H]

Identifier: 77458436

GI number: 77458436

Start: 2494414

End: 2495832

Strand: Reverse

Name: arpC [H]

Synonym: Pfl01_2209

Alternate gene names: 77458436

Gene position: 2495832-2494414 (Counterclockwise)

Preceding gene: 77458437

Following gene: 77458435

Centisome position: 38.76

GC content: 64.98

Gene sequence:

>1419_bases
ATGCCCAGGTTGCCGATTTCCCTGCTGACCGCCGCGCTGCTGCTGGGCGGTTGCTCGTTGATTCCCGATTACCAGCGACC
GGCATCGCCGAGCGCGGCGCAGTATCCGCAAGGTCCGGCGTATGCCGCGCAATCCCCTGTCACGCCCCGGGTCGAAGACT
GGCGCGCGCTGTTCAATGACCCGGCGTTGCAGCAATTGATTGAAAGCGCGCTGGTCAACAACCGTGACCTGCGGGTCGCT
GCGCTGAATGTCGAGGCGTTTCAGGCGCAGTACCGGATCCAGCGCGCCGATCTGCTGCCGGCGGTGTCGGCCAACGCCAA
CGAACTGCGCCAGCGGGTGCCGTCCAGCGTGACCCGCACCAAGGCGGCGATCACCTCGACCTACTCGGTGAATCTGGGCA
TCAGCGCCTATGAACTGGACTTCTTCGGCCGGGTGCGCAGTCTCAGCGAGCAGGCGCTGCTGACCTGGCTGTCCACCGAA
GAGGCGCGGCGCAGTGCGCAATTGAGTCTGGTGGCCAATGTCGCCAATGCCTACCTGACCTGGCGTGCCGATCAGGAGTT
GCTGGCACTGGCTCAGGAGACGCTGGCCGCCGACGAGCGCAGCCTGCACCTGACCACCCGCAACCGCGAGGCCGGCAAGT
CCTCGGCGCTGGATCAGATTCAGGCGCAGACCAGTGTCGACAGCACCCGCGCGAGCCTGGCCCGTTATCAGCGCCAGGTC
GCCCAGGACTTGAACAGCCTGACGCTGCTGGTGGGCGCGCCGGTGCCCGAGCACCTGCCGGCGCGTCCGCTGGACAGTGA
TCTTGTGGCAACCGTGCCGGCCGGATTGCCCTCGGATCTGCTGCAACGCCGACCGGACATTCTCCAGGCCGAATACAAGC
TGCGCGCCGCCAATGCCAACATCGGCGCGGCGCGGGCGGCGTTTTTCCCGAGTGTCAGCCTGACCGCCAATGCCGGGACA
TCCAGCCGCGATCTGTCCAGGCTGTTCAAGGGCGGCTCCGGGACCTGGACGTTCCAGCCGCAGATCAACTTGCCGATTTT
CAACGCCGGCAGTCTGCGCGCCAGCCTGGATTACGCGAAGCTGCAAAAAGACATCACCGTCGCCGAGTACGAAAAGACCA
TTCAGACGGCATTCCAGGAAGTGTCCGACGGCCTTGCGGCACGCCAGACCTACGAACAGCAACTCCAGGCCCAACGCGAT
CTGGTGCAGGCGACCCAGGATTACTACGACATGGCGCAGCATCGCTATCGAAGCGGCGTCGACAGCAGCCTGACGTTCCT
TGATGCCCAGCGTTCGCTGTTCAGTTCCCAGCAAGGACTGATTACCGATAGGTTGGCGCAGCTGGTGGCGCAAGTGAATC
TGTACACCGCGCTGGGCGGTGGCTGGAGCCCGGTCGAGCCGCTTCCGCCAGCACCTTGA

Upstream 100 bases:

>100_bases
GCCGTCACGGTCTGGCGAAATGGATGGCCGGAGCCTGATCCGGCGTTTTTCTCATCACGGGCGCCCGGCGTCCGCTCTCA
TTCGTGAACGAGGCTGTTTG

Downstream 100 bases:

>100_bases
GTCATTTTTTCTTACACCTTTTGTCGCCAGATCCCACATTGCCCAGCGATCGAAAACCGGCGCAGCGGATCATTTTGGTA
TCATGCGCCGCTTTTACGGT

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MPRLPISLLTAALLLGGCSLIPDYQRPASPSAAQYPQGPAYAAQSPVTPRVEDWRALFNDPALQQLIESALVNNRDLRVA
ALNVEAFQAQYRIQRADLLPAVSANANELRQRVPSSVTRTKAAITSTYSVNLGISAYELDFFGRVRSLSEQALLTWLSTE
EARRSAQLSLVANVANAYLTWRADQELLALAQETLAADERSLHLTTRNREAGKSSALDQIQAQTSVDSTRASLARYQRQV
AQDLNSLTLLVGAPVPEHLPARPLDSDLVATVPAGLPSDLLQRRPDILQAEYKLRAANANIGAARAAFFPSVSLTANAGT
SSRDLSRLFKGGSGTWTFQPQINLPIFNAGSLRASLDYAKLQKDITVAEYEKTIQTAFQEVSDGLAARQTYEQQLQAQRD
LVQATQDYYDMAQHRYRSGVDSSLTFLDAQRSLFSSQQGLITDRLAQLVAQVNLYTALGGGWSPVEPLPPAP

Sequences:

>Translated_472_residues
MPRLPISLLTAALLLGGCSLIPDYQRPASPSAAQYPQGPAYAAQSPVTPRVEDWRALFNDPALQQLIESALVNNRDLRVA
ALNVEAFQAQYRIQRADLLPAVSANANELRQRVPSSVTRTKAAITSTYSVNLGISAYELDFFGRVRSLSEQALLTWLSTE
EARRSAQLSLVANVANAYLTWRADQELLALAQETLAADERSLHLTTRNREAGKSSALDQIQAQTSVDSTRASLARYQRQV
AQDLNSLTLLVGAPVPEHLPARPLDSDLVATVPAGLPSDLLQRRPDILQAEYKLRAANANIGAARAAFFPSVSLTANAGT
SSRDLSRLFKGGSGTWTFQPQINLPIFNAGSLRASLDYAKLQKDITVAEYEKTIQTAFQEVSDGLAARQTYEQQLQAQRD
LVQATQDYYDMAQHRYRSGVDSSLTFLDAQRSLFSSQQGLITDRLAQLVAQVNLYTALGGGWSPVEPLPPAP
>Mature_471_residues
PRLPISLLTAALLLGGCSLIPDYQRPASPSAAQYPQGPAYAAQSPVTPRVEDWRALFNDPALQQLIESALVNNRDLRVAA
LNVEAFQAQYRIQRADLLPAVSANANELRQRVPSSVTRTKAAITSTYSVNLGISAYELDFFGRVRSLSEQALLTWLSTEE
ARRSAQLSLVANVANAYLTWRADQELLALAQETLAADERSLHLTTRNREAGKSSALDQIQAQTSVDSTRASLARYQRQVA
QDLNSLTLLVGAPVPEHLPARPLDSDLVATVPAGLPSDLLQRRPDILQAEYKLRAANANIGAARAAFFPSVSLTANAGTS
SRDLSRLFKGGSGTWTFQPQINLPIFNAGSLRASLDYAKLQKDITVAEYEKTIQTAFQEVSDGLAARQTYEQQLQAQRDL
VQATQDYYDMAQHRYRSGVDSSLTFLDAQRSLFSSQQGLITDRLAQLVAQVNLYTALGGGWSPVEPLPPAP

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=463, Percent_Identity=42.1166306695464, Blast_Score=323, Evalue=1e-89,
Organism=Escherichia coli, GI2367348, Length=486, Percent_Identity=26.1316872427983, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51507; Mature: 51376

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLPISLLTAALLLGGCSLIPDYQRPASPSAAQYPQGPAYAAQSPVTPRVEDWRALFND
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
PALQQLIESALVNNRDLRVAALNVEAFQAQYRIQRADLLPAVSANANELRQRVPSSVTRT
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHH
KAAITSTYSVNLGISAYELDFFGRVRSLSEQALLTWLSTEEARRSAQLSLVANVANAYLT
HHHHEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
WRADQELLALAQETLAADERSLHLTTRNREAGKSSALDQIQAQTSVDSTRASLARYQRQV
ECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQDLNSLTLLVGAPVPEHLPARPLDSDLVATVPAGLPSDLLQRRPDILQAEYKLRAANAN
HHHHHHEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHEEEECCCC
IGAARAAFFPSVSLTANAGTSSRDLSRLFKGGSGTWTFQPQINLPIFNAGSLRASLDYAK
CCHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCEEECCEECCEEECCCCCHHHHHHHH
LQKDITVAEYEKTIQTAFQEVSDGLAARQTYEQQLQAQRDLVQATQDYYDMAQHRYRSGV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DSSLTFLDAQRSLFSSQQGLITDRLAQLVAQVNLYTALGGGWSPVEPLPPAP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRLPISLLTAALLLGGCSLIPDYQRPASPSAAQYPQGPAYAAQSPVTPRVEDWRALFND
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
PALQQLIESALVNNRDLRVAALNVEAFQAQYRIQRADLLPAVSANANELRQRVPSSVTRT
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHH
KAAITSTYSVNLGISAYELDFFGRVRSLSEQALLTWLSTEEARRSAQLSLVANVANAYLT
HHHHEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
WRADQELLALAQETLAADERSLHLTTRNREAGKSSALDQIQAQTSVDSTRASLARYQRQV
ECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQDLNSLTLLVGAPVPEHLPARPLDSDLVATVPAGLPSDLLQRRPDILQAEYKLRAANAN
HHHHHHEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHEEEECCCC
IGAARAAFFPSVSLTANAGTSSRDLSRLFKGGSGTWTFQPQINLPIFNAGSLRASLDYAK
CCHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCEEECCEECCEEECCCCCHHHHHHHH
LQKDITVAEYEKTIQTAFQEVSDGLAARQTYEQQLQAQRDLVQATQDYYDMAQHRYRSGV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DSSLTFLDAQRSLFSSQQGLITDRLAQLVAQVNLYTALGGGWSPVEPLPPAP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]