| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yejA [C]
Identifier: 77458409
GI number: 77458409
Start: 2464824
End: 2466656
Strand: Reverse
Name: yejA [C]
Synonym: Pfl01_2182
Alternate gene names: 77458409
Gene position: 2466656-2464824 (Counterclockwise)
Preceding gene: 77458410
Following gene: 77458408
Centisome position: 38.31
GC content: 62.47
Gene sequence:
>1833_bases TTGAAGCGTCCCCTCCTCCTGCTCCTGATCAGCCTGGCCTTGAGCTCCCCCGTCAGCGCGACGATCACCGAAAGCCACGG TTATGCGCAGTTCGGCACGCTCAAGTACCCGGCCAGATTTACCCACTTCGACTGGGTCAACCCGCAAGCGCCCAAGGGCG GCACCTTGCGGGTGATGGCGTTTGGCACCTTCGATACGCTCAACCCCTACACCTTCAAGGGCACCAGCCCGGTTACCACC CCCAATTTCCTGCAGTACGGCATCAACGAGCTCAACGAGCCACTGATGGTCGGCACCGGGCAATACGCGCCGTCCGGGGA CGAACCGGCCTCCAGTTACGGCTTGATCGCCCAATCGGTGGAGTACAGCGAAGATCGCAGTTGGGTGGTGTTCAATCTGC GCCCGCAAGCGCATTTCCACGACGGCACACCGATCACCGCGTACGACGTGGCGTTTTCCTATCGCCTGCTGCTCAAGGAA GGTCACCCGCTGTATCGCACCGCCCTTCAGGAAGTGCTCCGCGTCGATATCCTCAATCCGCAGCGCATCCGTTTCGTACT CAAGCGCAGCGGCAATCCGTTGCTGATCCTGCGCCTCGGCGAATTGCCGGTGCTGCCCCAGCATTACTGGAAGGGCCGCG ACTTCAAGGCCACCACCTTCGAGCCGCCGCTGGGCAGCGGGCCGTACCGCATCACCTCGGTCACACCGGGCCGCCAGTTG ATTTTCGAGCGGGTCAAGGACTACTGGGGCAAGGACCTGCCGGTCAATCGCGGCAAGTACAACGTCGACCGCATGGAAGT CGAGTTCTACCGCGACAGCGATGTGGCCTTCGAAGCGTTCAAGGCCGGCGAGTTCGACATCTATATCGAGCATCAGGCCA AGAACTGGGCCAACGGCTACAACTTCCCGGCGATCCGTCGCGGCGACGTGATCAAGGCGCAGATCCCGCACCAGATCCCG ACCCAGAGCCAGGGGCTGTTCATGAACACCCGACGCCCGGCCTTCGCCGACATCAAGGTGCGCGAAGCCATGGGCCTGAT GTTCGACTTCGAATGGACTAACCGCGCGCTGTTCAGCGACGCCTACAAGCGCACCACCAGCTACTACCCCAACAGCGAGT TCAGCGCCGTCGGCCTGCCGGTCGGCCATGAATGGCTGATGCTCAAACCGTACAAGGATCAACTGCCGGCGCGCCTGTTC ACCGAACCGTTCACGCTGCCGCAGACCGACGGTCGCGGCATTCCTCGGGAAGCCATGCGCAAGGCCCTGGCGCTGCTGGC CGAGGCTGGCTGGAAGCTCAACGGCCAGCGTCTGCAGGACGCCGCCGGCCAGCCGCTGCGGTTCGAATTGCTGCTGGTCA ATCCGAACCTGGAGCGAATCCTCCAGCCGTATATCGAAAACCTCAACAGCATCGGCATCGACGCGCGCCTGCGCACGGTG GATCGCGCCCAATACAAACAGCGTCTGGACCAGTTCGATTTCGACATGATCCTGATGACCCTCAACCAGACGCTCAGCCC GGGGCTGGAACAGTGGCAGTACTTCCACTCCAGCCAGGTCGGGGTCAAGGGCAGCAAGAATTACGCGGGCATCGCCAACC CGGTGGTCGATCATCTGCTCGAGCAACTGCTCGCCGCCCGCACCCGCGATGAACAGGTCGCCGCCGGCAAGGCGCTCGAC CGCGTGCTGCTCTGGCAGCACTACAGCATTCCCAACTGGTACCTCAATTATCACCGTCTGGCGTACCGCAACCGGTTCGC CTTCGTCACTACGCCGCCCTACACCCTGGGCCTGAGCGCGTGGTGGCTGAAATCTTCGGAGAAAGATCGATGA
Upstream 100 bases:
>100_bases TCCCACAATTAACCGCGCATTAAGCCCCTGTCTTTTTCCTGTCCATACAAGCTGTTACTGTACGGCCCACAAAGCCCAAG CCGCCTGGATCGGATCTGAC
Downstream 100 bases:
>100_bases AGCCTATCCGCGCCCTGCTTGTGCAGGCCAGCGGTCTGCTGTTCGCCGGGCTGGCCTGTGCCGCCCCGCAACACGCCGTG ACCCTGTACAACGAGCCGCC
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 610; Mature: 610
Protein sequence:
>610_residues MKRPLLLLLISLALSSPVSATITESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFGTFDTLNPYTFKGTSPVTT PNFLQYGINELNEPLMVGTGQYAPSGDEPASSYGLIAQSVEYSEDRSWVVFNLRPQAHFHDGTPITAYDVAFSYRLLLKE GHPLYRTALQEVLRVDILNPQRIRFVLKRSGNPLLILRLGELPVLPQHYWKGRDFKATTFEPPLGSGPYRITSVTPGRQL IFERVKDYWGKDLPVNRGKYNVDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYNFPAIRRGDVIKAQIPHQIP TQSQGLFMNTRRPAFADIKVREAMGLMFDFEWTNRALFSDAYKRTTSYYPNSEFSAVGLPVGHEWLMLKPYKDQLPARLF TEPFTLPQTDGRGIPREAMRKALALLAEAGWKLNGQRLQDAAGQPLRFELLLVNPNLERILQPYIENLNSIGIDARLRTV DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWQYFHSSQVGVKGSKNYAGIANPVVDHLLEQLLAARTRDEQVAAGKALD RVLLWQHYSIPNWYLNYHRLAYRNRFAFVTTPPYTLGLSAWWLKSSEKDR
Sequences:
>Translated_610_residues MKRPLLLLLISLALSSPVSATITESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFGTFDTLNPYTFKGTSPVTT PNFLQYGINELNEPLMVGTGQYAPSGDEPASSYGLIAQSVEYSEDRSWVVFNLRPQAHFHDGTPITAYDVAFSYRLLLKE GHPLYRTALQEVLRVDILNPQRIRFVLKRSGNPLLILRLGELPVLPQHYWKGRDFKATTFEPPLGSGPYRITSVTPGRQL IFERVKDYWGKDLPVNRGKYNVDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYNFPAIRRGDVIKAQIPHQIP TQSQGLFMNTRRPAFADIKVREAMGLMFDFEWTNRALFSDAYKRTTSYYPNSEFSAVGLPVGHEWLMLKPYKDQLPARLF TEPFTLPQTDGRGIPREAMRKALALLAEAGWKLNGQRLQDAAGQPLRFELLLVNPNLERILQPYIENLNSIGIDARLRTV DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWQYFHSSQVGVKGSKNYAGIANPVVDHLLEQLLAARTRDEQVAAGKALD RVLLWQHYSIPNWYLNYHRLAYRNRFAFVTTPPYTLGLSAWWLKSSEKDR >Mature_610_residues MKRPLLLLLISLALSSPVSATITESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFGTFDTLNPYTFKGTSPVTT PNFLQYGINELNEPLMVGTGQYAPSGDEPASSYGLIAQSVEYSEDRSWVVFNLRPQAHFHDGTPITAYDVAFSYRLLLKE GHPLYRTALQEVLRVDILNPQRIRFVLKRSGNPLLILRLGELPVLPQHYWKGRDFKATTFEPPLGSGPYRITSVTPGRQL IFERVKDYWGKDLPVNRGKYNVDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGYNFPAIRRGDVIKAQIPHQIP TQSQGLFMNTRRPAFADIKVREAMGLMFDFEWTNRALFSDAYKRTTSYYPNSEFSAVGLPVGHEWLMLKPYKDQLPARLF TEPFTLPQTDGRGIPREAMRKALALLAEAGWKLNGQRLQDAAGQPLRFELLLVNPNLERILQPYIENLNSIGIDARLRTV DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWQYFHSSQVGVKGSKNYAGIANPVVDHLLEQLLAARTRDEQVAAGKALD RVLLWQHYSIPNWYLNYHRLAYRNRFAFVTTPPYTLGLSAWWLKSSEKDR
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=601, Percent_Identity=39.4342762063228, Blast_Score=431, Evalue=1e-122,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 69876; Mature: 69876
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRPLLLLLISLALSSPVSATITESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMA CCCHHHHHHHHHHHCCCCEEEEECCCCCEEECCEECCCEECEECCCCCCCCCCCEEEEEE FGTFDTLNPYTFKGTSPVTTPNFLQYGINELNEPLMVGTGQYAPSGDEPASSYGLIAQSV EECCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHCC EYSEDRSWVVFNLRPQAHFHDGTPITAYDVAFSYRLLLKEGHPLYRTALQEVLRVDILNP CCCCCCCEEEEEECCCCEECCCCCEEEEHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCH QRIRFVLKRSGNPLLILRLGELPVLPQHYWKGRDFKATTFEPPLGSGPYRITSVTPGRQL HHEEEEEECCCCEEEEEEECCCCCCCHHHCCCCCCEEEECCCCCCCCCEEEEEECCHHHH IFERVKDYWGKDLPVNRGKYNVDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGY HHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEHHCCCCCEEEEEEECCCCCCCCC NFPAIRRGDVIKAQIPHQIPTQSQGLFMNTRRPAFADIKVREAMGLMFDFEWTNRALFSD CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCEECEEHHHHHCEEEEECCCCHHHHHH AYKRTTSYYPNSEFSAVGLPVGHEWLMLKPYKDQLPARLFTEPFTLPQTDGRGIPREAMR HHHHHHCCCCCCCCEEECCCCCCCEEEEECCHHHCCHHHHCCCCCCCCCCCCCCCHHHHH KALALLAEAGWKLNGQRLQDAAGQPLRFELLLVNPNLERILQPYIENLNSIGIDARLRTV HHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHH DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWQYFHSSQVGVKGSKNYAGIANPVVDHLL HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH EQLLAARTRDEQVAAGKALDRVLLWQHYSIPNWYLNYHRLAYRNRFAFVTTPPYTLGLSA HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCEEEEECCCCEECCEE WWLKSSEKDR EEECCCCCCC >Mature Secondary Structure MKRPLLLLLISLALSSPVSATITESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMA CCCHHHHHHHHHHHCCCCEEEEECCCCCEEECCEECCCEECEECCCCCCCCCCCEEEEEE FGTFDTLNPYTFKGTSPVTTPNFLQYGINELNEPLMVGTGQYAPSGDEPASSYGLIAQSV EECCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHCC EYSEDRSWVVFNLRPQAHFHDGTPITAYDVAFSYRLLLKEGHPLYRTALQEVLRVDILNP CCCCCCCEEEEEECCCCEECCCCCEEEEHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCH QRIRFVLKRSGNPLLILRLGELPVLPQHYWKGRDFKATTFEPPLGSGPYRITSVTPGRQL HHEEEEEECCCCEEEEEEECCCCCCCHHHCCCCCCEEEECCCCCCCCCEEEEEECCHHHH IFERVKDYWGKDLPVNRGKYNVDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWANGY HHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEHHCCCCCEEEEEEECCCCCCCCC NFPAIRRGDVIKAQIPHQIPTQSQGLFMNTRRPAFADIKVREAMGLMFDFEWTNRALFSD CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCEECEEHHHHHCEEEEECCCCHHHHHH AYKRTTSYYPNSEFSAVGLPVGHEWLMLKPYKDQLPARLFTEPFTLPQTDGRGIPREAMR HHHHHHCCCCCCCCEEECCCCCCCEEEEECCHHHCCHHHHCCCCCCCCCCCCCCCHHHHH KALALLAEAGWKLNGQRLQDAAGQPLRFELLLVNPNLERILQPYIENLNSIGIDARLRTV HHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHH DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWQYFHSSQVGVKGSKNYAGIANPVVDHLL HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH EQLLAARTRDEQVAAGKALDRVLLWQHYSIPNWYLNYHRLAYRNRFAFVTTPPYTLGLSA HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCEEEEECCCCEECCEE WWLKSSEKDR EEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA