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The map label for this gene is rsr [H]

Identifier: 77458172

GI number: 77458172

Start: 2219297

End: 2220844

Strand: Direct

Name: rsr [H]

Synonym: Pfl01_1945

Alternate gene names: 77458172

Gene position: 2219297-2220844 (Clockwise)

Preceding gene: 77458170

Following gene: 77458173

Centisome position: 34.47

GC content: 60.92

Gene sequence:

>1548_bases
ATGGCCAACTTCAACCTCTTCAACACGCAATCGAAAAACCTGCCGGCGTGCGACACCTTGAATGCTTCCGGAGCTGCGGC
TTATGCCTACACGCCCAAGCATCAGCTGGCCCAGCTGGCAGTCACCGGTTGCCTGAATTCGACCTTTTACGCATCCGCTC
AAAGTCAGTTGGATCAGGTGTTGAAGCTGGTGGCAGAGCTGGACAGCCGCTTCGTGGCGAATGCCGCTCTTTATGCTCGC
CAGAAGGGCCATATGAAAGACATGCCGGCCTTATTGCTGGCGGCGCTGGCGGCTCAGCGCTCGGCGCTGGTGCCGGAGGT
GTTCGGGCAGGTCGTGGACAGCGGCAAGATGCTGCGCAATTTCGTGCAGATCCTGCGCAGTGGCGCCACCGGTCGCCGAT
CCTTGGGCTCCCAACCCAAGCGTCTGGTGCAGAACTGGCTGAACAGCGCGACCGAGCGACAGCTGCTGCAGGCATCGATC
GGCAATCAGCCTTCGCTGGCGGATGTGGTGAAGATGGTTCACCCAAAACCGTCCGAGGCCTGGCGTGAAGCGTTTTTTGC
CTGGGTGATCGGCAAGCCGGTGGATGCAAAGGCGTTGCCCGCACTGACTCGCGATTTGCTGGCCTTTCGCAGCGGTGCGA
GTGAGCAAGTGCCTGAAGTGCCTTTTCAATTGCTCGGTAACGAAACCTTGAGCAAGGAACAATGGGCAGCTCAGGCGCGG
AACATGGGCTGGCAGGGACTGCGCATCAACCTCAATACGCTGGCGCGCCATGGTGCTTTTGACGTGCCGGGTTGCACCGA
ATACGTGGCCGCGCGGTTGGCGGATCCCGAAGCCGTTGCGAAGGCGCGGGTGTATCCGTACCAGTTGCTGGCAGCGTACC
GGATGGTCGGCGATGACGTGCCGGCGCTGATACGCGAGGCTTTGCAGGATGCGCTGGAGCTCTCATTGACCAATGTGCCG
AAGCTGCAAGGTGCGGTGGTGGTTTGCCCGGATGTTTCCGGCTCGATGGGCAGCCCGCTGACCGGGTATCGTCAGGGCGC
GACCACGGCGGTGCGCTGCATCGATGTGGCGGCATTGATTACGGCGGCGGTGTTGCGTAAACAACCGACGGCACGGGTGA
TGCCATTCGAATGGAAGGTGGTGGATATCACCCTCAACCCGCGCGACAGTGTGATCAGCAATGCCGAAAAGCTTGCAGGC
ATTTTCGGCGGCGGAACCTGCTGCTCGGCGCCGTTGAAGAAACTGGCGGACAGCAAGGCCAGGGTCGATACGCTGATCAT
GGTGTCGGACAACGAATCCTGGATCGATGCGCGACGTCAGGGCGCCAGCGAGACGATGCTGCAATGGGAGCGGATAAAGC
GCATCAATCCCCAGGCACGCCTGATCTGCATTGACCTGCAACCGGGTTGGGCGACACCGGCGGCGGATCGTGACGACATC
CTGAATGTCGGCGGTTTCAGTGACGCGGTGTTTGATGTGATCGAACAGTTCACTGCCGGCCGGTACGGACCGCAGCACTG
GGTCGAAGCGATTGAGCGCATGGGATGA

Upstream 100 bases:

>100_bases
AAATCAACTAGATAAAAATATTTCGCGAACGTTTTCCAAAACTGGCACAGCGGCTGCAATACCTGTCACAACGAACAGGA
CAACACAGCGAGACGCCACG

Downstream 100 bases:

>100_bases
AGCCATGAGCCGCCCAAAGAATTGATTTGTCACGGGCACTGAATGCCGGTGGGACTACATCCAAGACGTCTCACCAAATC
CTTGTCAGTGCGCGTGACGG

Product: hypothetical protein

Products: NA

Alternate protein names: Ro sixty-related protein [H]

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MANFNLFNTQSKNLPACDTLNASGAAAYAYTPKHQLAQLAVTGCLNSTFYASAQSQLDQVLKLVAELDSRFVANAALYAR
QKGHMKDMPALLLAALAAQRSALVPEVFGQVVDSGKMLRNFVQILRSGATGRRSLGSQPKRLVQNWLNSATERQLLQASI
GNQPSLADVVKMVHPKPSEAWREAFFAWVIGKPVDAKALPALTRDLLAFRSGASEQVPEVPFQLLGNETLSKEQWAAQAR
NMGWQGLRINLNTLARHGAFDVPGCTEYVAARLADPEAVAKARVYPYQLLAAYRMVGDDVPALIREALQDALELSLTNVP
KLQGAVVVCPDVSGSMGSPLTGYRQGATTAVRCIDVAALITAAVLRKQPTARVMPFEWKVVDITLNPRDSVISNAEKLAG
IFGGGTCCSAPLKKLADSKARVDTLIMVSDNESWIDARRQGASETMLQWERIKRINPQARLICIDLQPGWATPAADRDDI
LNVGGFSDAVFDVIEQFTAGRYGPQHWVEAIERMG

Sequences:

>Translated_515_residues
MANFNLFNTQSKNLPACDTLNASGAAAYAYTPKHQLAQLAVTGCLNSTFYASAQSQLDQVLKLVAELDSRFVANAALYAR
QKGHMKDMPALLLAALAAQRSALVPEVFGQVVDSGKMLRNFVQILRSGATGRRSLGSQPKRLVQNWLNSATERQLLQASI
GNQPSLADVVKMVHPKPSEAWREAFFAWVIGKPVDAKALPALTRDLLAFRSGASEQVPEVPFQLLGNETLSKEQWAAQAR
NMGWQGLRINLNTLARHGAFDVPGCTEYVAARLADPEAVAKARVYPYQLLAAYRMVGDDVPALIREALQDALELSLTNVP
KLQGAVVVCPDVSGSMGSPLTGYRQGATTAVRCIDVAALITAAVLRKQPTARVMPFEWKVVDITLNPRDSVISNAEKLAG
IFGGGTCCSAPLKKLADSKARVDTLIMVSDNESWIDARRQGASETMLQWERIKRINPQARLICIDLQPGWATPAADRDDI
LNVGGFSDAVFDVIEQFTAGRYGPQHWVEAIERMG
>Mature_514_residues
ANFNLFNTQSKNLPACDTLNASGAAAYAYTPKHQLAQLAVTGCLNSTFYASAQSQLDQVLKLVAELDSRFVANAALYARQ
KGHMKDMPALLLAALAAQRSALVPEVFGQVVDSGKMLRNFVQILRSGATGRRSLGSQPKRLVQNWLNSATERQLLQASIG
NQPSLADVVKMVHPKPSEAWREAFFAWVIGKPVDAKALPALTRDLLAFRSGASEQVPEVPFQLLGNETLSKEQWAAQARN
MGWQGLRINLNTLARHGAFDVPGCTEYVAARLADPEAVAKARVYPYQLLAAYRMVGDDVPALIREALQDALELSLTNVPK
LQGAVVVCPDVSGSMGSPLTGYRQGATTAVRCIDVAALITAAVLRKQPTARVMPFEWKVVDITLNPRDSVISNAEKLAGI
FGGGTCCSAPLKKLADSKARVDTLIMVSDNESWIDARRQGASETMLQWERIKRINPQARLICIDLQPGWATPAADRDDIL
NVGGFSDAVFDVIEQFTAGRYGPQHWVEAIERMG

Specific function: Binds to several small RNAs that accumulate during recovery from UV irradiation. Contributes to the resistance of D.radiodurans to ultraviolet irradiation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TROVE domain [H]

Homologues:

Organism=Homo sapiens, GI291084629, Length=537, Percent_Identity=21.9739292364991, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI31377800, Length=537, Percent_Identity=21.9739292364991, Blast_Score=74, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008858 [H]

Pfam domain/function: PF05731 TROVE [H]

EC number: NA

Molecular weight: Translated: 55984; Mature: 55853

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50988 TROVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANFNLFNTQSKNLPACDTLNASGAAAYAYTPKHQLAQLAVTGCLNSTFYASAQSQLDQV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LKLVAELDSRFVANAALYARQKGHMKDMPALLLAALAAQRSALVPEVFGQVVDSGKMLRN
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FVQILRSGATGRRSLGSQPKRLVQNWLNSATERQLLQASIGNQPSLADVVKMVHPKPSEA
HHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
WREAFFAWVIGKPVDAKALPALTRDLLAFRSGASEQVPEVPFQLLGNETLSKEQWAAQAR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHH
NMGWQGLRINLNTLARHGAFDVPGCTEYVAARLADPEAVAKARVYPYQLLAAYRMVGDDV
CCCCCEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCH
PALIREALQDALELSLTNVPKLQGAVVVCPDVSGSMGSPLTGYRQGATTAVRCIDVAALI
HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHH
TAAVLRKQPTARVMPFEWKVVDITLNPRDSVISNAEKLAGIFGGGTCCSAPLKKLADSKA
HHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
RVDTLIMVSDNESWIDARRQGASETMLQWERIKRINPQARLICIDLQPGWATPAADRDDI
CEEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCC
LNVGGFSDAVFDVIEQFTAGRYGPQHWVEAIERMG
EECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ANFNLFNTQSKNLPACDTLNASGAAAYAYTPKHQLAQLAVTGCLNSTFYASAQSQLDQV
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LKLVAELDSRFVANAALYARQKGHMKDMPALLLAALAAQRSALVPEVFGQVVDSGKMLRN
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
FVQILRSGATGRRSLGSQPKRLVQNWLNSATERQLLQASIGNQPSLADVVKMVHPKPSEA
HHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
WREAFFAWVIGKPVDAKALPALTRDLLAFRSGASEQVPEVPFQLLGNETLSKEQWAAQAR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHH
NMGWQGLRINLNTLARHGAFDVPGCTEYVAARLADPEAVAKARVYPYQLLAAYRMVGDDV
CCCCCEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHCCCH
PALIREALQDALELSLTNVPKLQGAVVVCPDVSGSMGSPLTGYRQGATTAVRCIDVAALI
HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHH
TAAVLRKQPTARVMPFEWKVVDITLNPRDSVISNAEKLAGIFGGGTCCSAPLKKLADSKA
HHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
RVDTLIMVSDNESWIDARRQGASETMLQWERIKRINPQARLICIDLQPGWATPAADRDDI
CEEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCC
LNVGGFSDAVFDVIEQFTAGRYGPQHWVEAIERMG
EECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266; 10766734 [H]