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The map label for this gene is capA [H]

Identifier: 77458156

GI number: 77458156

Start: 2199284

End: 2199496

Strand: Reverse

Name: capA [H]

Synonym: Pfl01_1929

Alternate gene names: 77458156

Gene position: 2199496-2199284 (Counterclockwise)

Preceding gene: 77458157

Following gene: 77458153

Centisome position: 34.16

GC content: 49.77

Gene sequence:

>213_bases
ATGTCTAATCGCCAAACCGGCACCGTTAAATGGTTCAACGATGAAAAAGGCTTCGGCTTCATCACTCCTCAAGGTGGCGG
TGACGACCTGTTCGTACACTTCAAAGCTATCGAAACTGACGGTTTCAAAAGCCTGAAAGAAGGCCAGACCGTCTCCTTCG
TGGCTGAGAAAGGCCAAAAGGGTATGCAAGCTGCACAAGTTCGCCCAGAGTAA

Upstream 100 bases:

>100_bases
GGGCTACCAAAGCGAACATTTCGACTATGATACCCCGGTGTGCCCAGTTGGCCTGAGCAGCACAGTACTACTGAAAATAT
ATGTTTCTTGGAGATACACC

Downstream 100 bases:

>100_bases
TTTCCCGGCGCACTAAAAAAACCCCGTCCATGTGACGGGGTTTTTTATGGGTAAGACAAATGCCCGAAACTCAGCCGCAG
CTGACGCGAGTGACCACCAG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: C7.0; Cold acclimation protein A [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIETDGFKSLKEGQTVSFVAEKGQKGMQAAQVRPE

Sequences:

>Translated_70_residues
MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIETDGFKSLKEGQTVSFVAEKGQKGMQAAQVRPE
>Mature_69_residues
SNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIETDGFKSLKEGQTVSFVAEKGQKGMQAAQVRPE

Specific function: Affects cell viability at low temperatures [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=62.6865671641791, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=58.2089552238806, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=58.2089552238806, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=59.7014925373134, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=52.3076923076923, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=62.2950819672131, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=60.655737704918, Blast_Score=77, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=44.2622950819672, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7711; Mature: 7580

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIETDGFKSLKEGQTVSFVAEKGQK
CCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCC
GMQAAQVRPE
CCCCCCCCCC
>Mature Secondary Structure 
SNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIETDGFKSLKEGQTVSFVAEKGQK
CCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCC
GMQAAQVRPE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9393697 [H]