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The map label for this gene is fecI [H]

Identifier: 77458085

GI number: 77458085

Start: 2117242

End: 2117724

Strand: Direct

Name: fecI [H]

Synonym: Pfl01_1858

Alternate gene names: 77458085

Gene position: 2117242-2117724 (Clockwise)

Preceding gene: 77458081

Following gene: 77458086

Centisome position: 32.88

GC content: 58.39

Gene sequence:

>483_bases
ATGTTGGAAAACTACTATCGCGAGTTGGTGTGTTTCCTGAACGCCAGGCTCGGCAACCGTCAGGTGGCCGAAGACGTGGT
GCATGACGCTTATCTGCGGGTGCTGGAGCGATCCAGCGAAACGCCGATCGAGCAGCCTCGGGCATTTCTCTATCGCACCG
CACTCAATCTGGTGATCGACGACCATCGACGCAATGCCCTGCGTCAGGTCGAATCGCTGGAAGTGCTCGACAGCGAAGAG
CGCTATTTCACTCCATCCCCCCACAACACCTTCGATCACGGCCAGCGACTGGAGATGCTCCAGCGCGCCCTCGCTGAACT
TTCGCCGCTGTGCCGCGAAAGTTTTCTGCTACGCAAGATCGAAGGCCTGTCGCACCCCGAAATCGCCCAGCACCTCGGCA
TTTCCAAGGCCCTGGTGGAAAAACACATCGTCAACGCCATGAAGCATTGCCGCCTGCGCATCAAGCAATGGGACGCCCAT
TGA

Upstream 100 bases:

>100_bases
ATAAATTACGCACCTGAAATTGCCACTACCGTGCCACTGCCTTTTTCGACAGTCGCGGATCTGGCTCAAGGATCGAAACC
GCACGCTGCGGCGGGGAATC

Downstream 100 bases:

>100_bases
GCCGTCGTCGTTAAATTTTATTTCACTGTCCTCGTTCCTACTCAACAGACGATCTGCTGTCCTGCTCAAGGCCGGTCAGG
TCACTCAGGCTTTTCGTCCA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MLENYYRELVCFLNARLGNRQVAEDVVHDAYLRVLERSSETPIEQPRAFLYRTALNLVIDDHRRNALRQVESLEVLDSEE
RYFTPSPHNTFDHGQRLEMLQRALAELSPLCRESFLLRKIEGLSHPEIAQHLGISKALVEKHIVNAMKHCRLRIKQWDAH

Sequences:

>Translated_160_residues
MLENYYRELVCFLNARLGNRQVAEDVVHDAYLRVLERSSETPIEQPRAFLYRTALNLVIDDHRRNALRQVESLEVLDSEE
RYFTPSPHNTFDHGQRLEMLQRALAELSPLCRESFLLRKIEGLSHPEIAQHLGISKALVEKHIVNAMKHCRLRIKQWDAH
>Mature_160_residues
MLENYYRELVCFLNARLGNRQVAEDVVHDAYLRVLERSSETPIEQPRAFLYRTALNLVIDDHRRNALRQVESLEVLDSEE
RYFTPSPHNTFDHGQRLEMLQRALAELSPLCRESFLLRKIEGLSHPEIAQHLGISKALVEKHIVNAMKHCRLRIKQWDAH

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=144, Percent_Identity=34.7222222222222, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18795; Mature: 18795

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLENYYRELVCFLNARLGNRQVAEDVVHDAYLRVLERSSETPIEQPRAFLYRTALNLVID
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
DHRRNALRQVESLEVLDSEERYFTPSPHNTFDHGQRLEMLQRALAELSPLCRESFLLRKI
HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGLSHPEIAQHLGISKALVEKHIVNAMKHCRLRIKQWDAH
HCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLENYYRELVCFLNARLGNRQVAEDVVHDAYLRVLERSSETPIEQPRAFLYRTALNLVID
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
DHRRNALRQVESLEVLDSEERYFTPSPHNTFDHGQRLEMLQRALAELSPLCRESFLLRKI
HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGLSHPEIAQHLGISKALVEKHIVNAMKHCRLRIKQWDAH
HCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]