BacMap

Definition	Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession	NC_007492
Length	6,438,405

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The map label for this gene is gdhII [H]

Identifier: 77458067

GI number: 77458067

Start: 2058753

End: 2059553

Strand: Reverse

Name: gdhII [H]

Synonym: Pfl01_1840

Alternate gene names: 77458067

Gene position: 2059553-2058753 (Counterclockwise)

Preceding gene: 77458068

Following gene: 77458066

Centisome position: 31.99

GC content: 65.42

Gene sequence:

>801_bases
ATGCAGATTTCCCTCGCCCGCCAAGTGGCTCTTGTCACCGGCGCCAGTTCCGGCATCGGCCACGGCGCCGCCAAAGCCCT
GGCCGCTGCCGGTGCCGCTGTCGTCATCAACTACAACCGCCAGGCCGAGCCCGCCGAAGCGCTGGCCCGGCAGATCGTCG
CCGACGGTGGTCAGGCCATCGCGATTGGCGCAGATGTTTCGAAAGAAGAAGACGTGGAGCGGCTGTTCCAGCAAACCCTC
GACGCCTTCGGCACACTGGACATTCTGGTGGCCAATTCCGGCCTGCAAAAAGACGCGGCGGCTGTGGATATGTCGCTGGC
CGACTGGAACGCGGTGATCGACGTCAACCTCACCGGCCAGTTCCTCTGCGCCCGCGCCGCGCTGCGGATCTTCAATCGCC
AGGGCGTGCGCGAAGGCGTGTCCCGGGCCGCCGGCAAGATCATCCACATGAGCTCGGTGCACCAGCGCATTCCGTGGGCT
GGGCACGTCAATTACGCAGCGTCCAAGGGCGGCGTCGATCAGCTGATGCAGACCCTGGCCCAGGAAGTCAGCCACCAGCG
CATCCGCATCAACGGCATCGCGCCGGGGGCGATCCGCACGGCCATCAACAAAGACGCCACCGAAGGCGACGCCGCGCAGG
CCCTGCTCAAACTCATCCCTTACGGGCGCATCGGCGATGTCGAGGACGTGGCCAACGCGGTGGTGTTTCTCGCCTCCGAT
GCCTCCGACTACATCGTCGGCACCACCTTGTTCATCGACGGCGGCATGAGCCTCTATCCGGAGTTCCGTGGCAATGGCTG
A

Upstream 100 bases:

>100_bases
CGGGACTCGACTTGATTACGTGCCCCTTCGCATTCACGCTGAACTCTGACTCAAGGATGCCGGTCAGCAGATCAGATCCC
CGCATAAGGCGCGACCGTTC

Downstream 100 bases:

>100_bases
GCATCATCCCGAACGACAAAGCCCCATCGACGCCCACGGCATCATTGGCGACCTGCGCAGTGCCGCGCTGGTCAATGACA
AGGGCAGCGTGGATTTTTTC

Product: glucose 1-dehydrogenase

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MQISLARQVALVTGASSGIGHGAAKALAAAGAAVVINYNRQAEPAEALARQIVADGGQAIAIGADVSKEEDVERLFQQTL
DAFGTLDILVANSGLQKDAAAVDMSLADWNAVIDVNLTGQFLCARAALRIFNRQGVREGVSRAAGKIIHMSSVHQRIPWA
GHVNYAASKGGVDQLMQTLAQEVSHQRIRINGIAPGAIRTAINKDATEGDAAQALLKLIPYGRIGDVEDVANAVVFLASD
ASDYIVGTTLFIDGGMSLYPEFRGNG

Sequences:

>Translated_266_residues
MQISLARQVALVTGASSGIGHGAAKALAAAGAAVVINYNRQAEPAEALARQIVADGGQAIAIGADVSKEEDVERLFQQTL
DAFGTLDILVANSGLQKDAAAVDMSLADWNAVIDVNLTGQFLCARAALRIFNRQGVREGVSRAAGKIIHMSSVHQRIPWA
GHVNYAASKGGVDQLMQTLAQEVSHQRIRINGIAPGAIRTAINKDATEGDAAQALLKLIPYGRIGDVEDVANAVVFLASD
ASDYIVGTTLFIDGGMSLYPEFRGNG
>Mature_266_residues
MQISLARQVALVTGASSGIGHGAAKALAAAGAAVVINYNRQAEPAEALARQIVADGGQAIAIGADVSKEEDVERLFQQTL
DAFGTLDILVANSGLQKDAAAVDMSLADWNAVIDVNLTGQFLCARAALRIFNRQGVREGVSRAAGKIIHMSSVHQRIPWA
GHVNYAASKGGVDQLMQTLAQEVSHQRIRINGIAPGAIRTAINKDATEGDAAQALLKLIPYGRIGDVEDVANAVVFLASD
ASDYIVGTTLFIDGGMSLYPEFRGNG

Specific function: Catalyzes A Reversible Reduction Of 5-Ketoglutanate To Form D-Gluconate. Dependent On Nadp, Almost Inactive With NAD. [C]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=36.6037735849057, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=34.2629482071713, Blast_Score=127, Evalue=8e-30,
Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=33.8403041825095, Blast_Score=124, Evalue=9e-29,
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=31.640625, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI7705925, Length=258, Percent_Identity=31.0077519379845, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=31.640625, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI126723750, Length=263, Percent_Identity=29.277566539924, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI59889578, Length=246, Percent_Identity=30.4878048780488, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI31542939, Length=245, Percent_Identity=30.6122448979592, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI4504505, Length=224, Percent_Identity=31.25, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=29.4820717131474, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=28.3524904214559, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI66933014, Length=227, Percent_Identity=27.7533039647577, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI33667109, Length=202, Percent_Identity=32.1782178217822, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=29.6116504854369, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=29.6116504854369, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=27.4131274131274, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=27.843137254902, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI224922801, Length=184, Percent_Identity=31.5217391304348, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI126723191, Length=190, Percent_Identity=30, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI7706318, Length=219, Percent_Identity=25.5707762557078, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI20149619, Length=215, Percent_Identity=26.046511627907, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=35.6862745098039, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=35.0597609561753, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=31.640625, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=36.0153256704981, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=36.5461847389558, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=33.203125, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87082100, Length=265, Percent_Identity=33.5849056603774, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1789057, Length=269, Percent_Identity=29.7397769516729, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787905, Length=254, Percent_Identity=30.7086614173228, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=28.7937743190661, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=27.734375, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787526, Length=215, Percent_Identity=31.1627906976744, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=28.2258064516129, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787820, Length=239, Percent_Identity=27.6150627615063, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=36.4705882352941, Blast_Score=147, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=33.7209302325581, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=32.6612903225806, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17560332, Length=274, Percent_Identity=30.6569343065693, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17531453, Length=276, Percent_Identity=32.9710144927536, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=29.0196078431373, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=30.3703703703704, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=28.4615384615385, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=276, Percent_Identity=30.0724637681159, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=276, Percent_Identity=29.3478260869565, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=271, Percent_Identity=29.1512915129151, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=29.8507462686567, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=276, Percent_Identity=28.9855072463768, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17538480, Length=280, Percent_Identity=28.9285714285714, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=30.7086614173228, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=30.5660377358491, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=30.03663003663, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=28, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=31.6176470588235, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=274, Percent_Identity=29.1970802919708, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=30.9090909090909, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=30.5343511450382, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=272, Percent_Identity=30.8823529411765, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=27.5471698113208, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=30.1158301158301, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17568967, Length=208, Percent_Identity=29.3269230769231, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=273, Percent_Identity=27.8388278388278, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71997099, Length=217, Percent_Identity=29.9539170506912, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=31.1284046692607, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17555612, Length=265, Percent_Identity=29.4339622641509, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=260, Percent_Identity=28.0769230769231, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=245, Percent_Identity=26.9387755102041, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI86565303, Length=270, Percent_Identity=27.037037037037, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=275, Percent_Identity=31.6363636363636, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6322861, Length=203, Percent_Identity=31.0344827586207, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=268, Percent_Identity=27.9850746268657, Blast_Score=72, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=214, Percent_Identity=25.2336448598131, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397609, Length=264, Percent_Identity=34.469696969697, Blast_Score=137, Evalue=5e-33,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=33.7254901960784, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=32.4427480916031, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=31.9230769230769, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=32.421875, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=32.6923076923077, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24643142, Length=260, Percent_Identity=29.6153846153846, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=28.1853281853282, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=35.8585858585859, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24641232, Length=209, Percent_Identity=33.0143540669856, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737361, Length=264, Percent_Identity=28.4090909090909, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28571387, Length=241, Percent_Identity=28.6307053941909, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281364494, Length=207, Percent_Identity=31.4009661835749, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24648944, Length=199, Percent_Identity=32.1608040201005, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641388, Length=240, Percent_Identity=31.25, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007234, Length=205, Percent_Identity=30.2439024390244, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24663911, Length=242, Percent_Identity=26.8595041322314, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21358495, Length=230, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357673, Length=213, Percent_Identity=27.6995305164319, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648693, Length=238, Percent_Identity=28.1512605042017, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355889, Length=238, Percent_Identity=28.1512605042017, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007232, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24665243, Length=209, Percent_Identity=29.1866028708134, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24665247, Length=209, Percent_Identity=28.7081339712919, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI221331218, Length=208, Percent_Identity=29.3269230769231, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI221331216, Length=208, Percent_Identity=28.8461538461538, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 27833; Mature: 27833

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISLARQVALVTGASSGIGHGAAKALAAAGAAVVINYNRQAEPAEALARQIVADGGQAI
CCCHHHHHHHEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE
AIGADVSKEEDVERLFQQTLDAFGTLDILVANSGLQKDAAAVDMSLADWNAVIDVNLTGQ
EEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHEEEECCCCEEEEEECCHH
FLCARAALRIFNRQGVREGVSRAAGKIIHMSSVHQRIPWAGHVNYAASKGGVDQLMQTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QEVSHQRIRINGIAPGAIRTAINKDATEGDAAQALLKLIPYGRIGDVEDVANAVVFLASD
HHHCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHEEEEEECC
ASDYIVGTTLFIDGGMSLYPEFRGNG
CCCEEEEEEEEEECCCEECCCCCCCC
>Mature Secondary Structure
MQISLARQVALVTGASSGIGHGAAKALAAAGAAVVINYNRQAEPAEALARQIVADGGQAI
CCCHHHHHHHEEECCCCCCCHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE
AIGADVSKEEDVERLFQQTLDAFGTLDILVANSGLQKDAAAVDMSLADWNAVIDVNLTGQ
EEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHEEEECCCCEEEEEECCHH
FLCARAALRIFNRQGVREGVSRAAGKIIHMSSVHQRIPWAGHVNYAASKGGVDQLMQTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
QEVSHQRIRINGIAPGAIRTAINKDATEGDAAQALLKLIPYGRIGDVEDVANAVVFLASD
HHHCCCEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHEEEEEECC
ASDYIVGTTLFIDGGMSLYPEFRGNG
CCCEEEEEEEEEECCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA