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The map label for this gene is yncC [C]

Identifier: 77458025

GI number: 77458025

Start: 2005219

End: 2005878

Strand: Direct

Name: yncC [C]

Synonym: Pfl01_1798

Alternate gene names: 77458025

Gene position: 2005219-2005878 (Clockwise)

Preceding gene: 77458020

Following gene: 77458026

Centisome position: 31.14

GC content: 64.24

Gene sequence:

>660_bases
ATGACGTTCAAGGCGCCGGACAGCCTCGCCGAGCAAATCGCTCACCACCTCGCCGAACGGATCATTCGCGGCGAAATGAA
GCCGGGAGAGCGCATCCAGGAACAAAAGGTCACGCTGGCGCTGAACGTCAGCCGCGGCTCTGTCCGCGAAGCCTTGCTGA
TCCTCGAGCGCCGTCACCTGATCGCGATCCTGCCGCGCCGAGGCGCCCACGTCACCGAACTGACGGCGCACAAGGTGCAG
AGCCTGTGCACGTTGATGAGCGAGTTGTACATCCTGCTCGGCAACGCCGTGGCCAATGGCTGGCAGACCCAGGCCGACAT
GGCGCCGTTCGTGCAGATCCAGCAGCGCCTGACCGCCAGCTACGAGCGTCAGGACATCCGCACCTTCGTCGACGACAGCT
TCAACGTGATGCGCGCCGCGTATCCGTTCGCCAACAACCCGTACCTGCAGGAAACCGTCGAGAACCTGCAACCGGCCATG
AGCCGTGCGTACTTCCTCGCGCTGGAGCAGCGCAAGGCCGAGATGAGCGAGTTCCTCGAACTGTTCGAACGCTTGCTCGC
TGCCGTCCTTGCCCGTGACCTGCCGCAGATCCGCATCGTGCTGACGGCTTACGCCCAGCGCAGCTGCGATCTGGTGGTGT
CCGCCCTGACGGTTGCCTGA

Upstream 100 bases:

>100_bases
CGGGATTCGTGCCAAAAACCGCTGTGCGGGCACTCCGCCATGACCGCGCATTGCGCTACACTGCGCCGCTTGTGCAGATC
GAAGAGTTTGAAGGACAACC

Downstream 100 bases:

>100_bases
CCTTGCGGCTCAAGTGCATCAAGCTGGCGGGGTTCAAATCCTTCGTCGATCCGACCACGGTGAACTTCCCCAGCAACATG
GCGGCGGTCGTCGGGCCGAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Regulatory Protein GntR HTH; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Bacterial Regulatory Protein; Transcriptional Regulator GntR Family Protein

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTFKAPDSLAEQIAHHLAERIIRGEMKPGERIQEQKVTLALNVSRGSVREALLILERRHLIAILPRRGAHVTELTAHKVQ
SLCTLMSELYILLGNAVANGWQTQADMAPFVQIQQRLTASYERQDIRTFVDDSFNVMRAAYPFANNPYLQETVENLQPAM
SRAYFLALEQRKAEMSEFLELFERLLAAVLARDLPQIRIVLTAYAQRSCDLVVSALTVA

Sequences:

>Translated_219_residues
MTFKAPDSLAEQIAHHLAERIIRGEMKPGERIQEQKVTLALNVSRGSVREALLILERRHLIAILPRRGAHVTELTAHKVQ
SLCTLMSELYILLGNAVANGWQTQADMAPFVQIQQRLTASYERQDIRTFVDDSFNVMRAAYPFANNPYLQETVENLQPAM
SRAYFLALEQRKAEMSEFLELFERLLAAVLARDLPQIRIVLTAYAQRSCDLVVSALTVA
>Mature_218_residues
TFKAPDSLAEQIAHHLAERIIRGEMKPGERIQEQKVTLALNVSRGSVREALLILERRHLIAILPRRGAHVTELTAHKVQS
LCTLMSELYILLGNAVANGWQTQADMAPFVQIQQRLTASYERQDIRTFVDDSFNVMRAAYPFANNPYLQETVENLQPAMS
RAYFLALEQRKAEMSEFLELFERLLAAVLARDLPQIRIVLTAYAQRSCDLVVSALTVA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24807; Mature: 24676

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKAPDSLAEQIAHHLAERIIRGEMKPGERIQEQKVTLALNVSRGSVREALLILERRHL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEECCCHHHHHHHHHHHHHHH
IAILPRRGAHVTELTAHKVQSLCTLMSELYILLGNAVANGWQTQADMAPFVQIQQRLTAS
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YERQDIRTFVDDSFNVMRAAYPFANNPYLQETVENLQPAMSRAYFLALEQRKAEMSEFLE
HHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFERLLAAVLARDLPQIRIVLTAYAQRSCDLVVSALTVA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFKAPDSLAEQIAHHLAERIIRGEMKPGERIQEQKVTLALNVSRGSVREALLILERRHL
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEECCCHHHHHHHHHHHHHHH
IAILPRRGAHVTELTAHKVQSLCTLMSELYILLGNAVANGWQTQADMAPFVQIQQRLTAS
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YERQDIRTFVDDSFNVMRAAYPFANNPYLQETVENLQPAMSRAYFLALEQRKAEMSEFLE
HHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFERLLAAVLARDLPQIRIVLTAYAQRSCDLVVSALTVA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA