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The map label for this gene is ydaL [C]

Identifier: 77457943

GI number: 77457943

Start: 1910733

End: 1911290

Strand: Reverse

Name: ydaL [C]

Synonym: Pfl01_1716

Alternate gene names: 77457943

Gene position: 1911290-1910733 (Counterclockwise)

Preceding gene: 77457944

Following gene: 77457942

Centisome position: 29.69

GC content: 61.11

Gene sequence:

>558_bases
ATGCAAGACGACGATTTTTCCCTGTTCAAAAGTGCGATTCAAGGCGTCAAGCCGATCAAGCACGACCGCGCCGACACCGG
CAAACCCAAGACTGACCGTGACCGGATCGCCAAGCTGCGCCAGTCCGCCACCGTGCGCACCGACACCACCACCGTTGATG
GCCTGTCCGATCAGTTCGTGATCGACGTCGGTCCCGAAGACGAGTTGATGTGGGCCCGCGACGGGGTGCAGGAAAGCCAG
ATGCGCAAGCTCAAGATCGGGCAGATCCCGTTCGAAGGCAGCCTCGACCTGCACGGCATGAGCGTAGAAAAAGCCCGCGA
AACCCTTTGGGCGTTTCTCGCCGAAGCCACCAGATTCGAAATCCGCTGCGTACGCGTCACCCACGGCAAGGCCGTGCGTC
TGGACGGCAAGCGGCCGATGATCAAAAGCCACGTCAACACCTGGCTGCGCCAGCATGCGCAAGTGCTCGGTTTCTGCTCG
TGCCAGGCGAAACATGGCGGCGCCGGCGCGGTTTACGTGATGCTGAAACGCACCATGATGGAAGGCCGCGACGAATAA

Upstream 100 bases:

>100_bases
CGCACCTGATGAAAAAACACGATTGAATTGAGGGCCTGGCTTTTTGCCGGGCCGTTTTGTGTCCGTTTGGGTAAACTGGC
CGCCCTTCGCGGAGGCTGAC

Downstream 100 bases:

>100_bases
ACCCGTCACACCGAACTTGCAGGGTCGTGTCCGCCACCGTACCCTTGCCCTTTGCGAAAATCCCCACAGGTAGTTTCATG
TCCCTGGAACAGAATTACAC

Product: Smr protein/MutS2-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQDDDFSLFKSAIQGVKPIKHDRADTGKPKTDRDRIAKLRQSATVRTDTTTVDGLSDQFVIDVGPEDELMWARDGVQESQ
MRKLKIGQIPFEGSLDLHGMSVEKARETLWAFLAEATRFEIRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHAQVLGFCS
CQAKHGGAGAVYVMLKRTMMEGRDE

Sequences:

>Translated_185_residues
MQDDDFSLFKSAIQGVKPIKHDRADTGKPKTDRDRIAKLRQSATVRTDTTTVDGLSDQFVIDVGPEDELMWARDGVQESQ
MRKLKIGQIPFEGSLDLHGMSVEKARETLWAFLAEATRFEIRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHAQVLGFCS
CQAKHGGAGAVYVMLKRTMMEGRDE
>Mature_185_residues
MQDDDFSLFKSAIQGVKPIKHDRADTGKPKTDRDRIAKLRQSATVRTDTTTVDGLSDQFVIDVGPEDELMWARDGVQESQ
MRKLKIGQIPFEGSLDLHGMSVEKARETLWAFLAEATRFEIRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHAQVLGFCS
CQAKHGGAGAVYVMLKRTMMEGRDE

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=179, Percent_Identity=32.4022346368715, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788671, Length=176, Percent_Identity=26.7045454545455, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 20871; Mature: 20871

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDDDFSLFKSAIQGVKPIKHDRADTGKPKTDRDRIAKLRQSATVRTDTTTVDGLSDQFV
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEECCCCCEECCCCCCEE
IDVGPEDELMWARDGVQESQMRKLKIGQIPFEGSLDLHGMSVEKARETLWAFLAEATRFE
EEECCCCCEEEHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEE
IRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHAQVLGFCSCQAKHGGAGAVYVMLKRTMM
EEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
EGRDE
CCCCC
>Mature Secondary Structure
MQDDDFSLFKSAIQGVKPIKHDRADTGKPKTDRDRIAKLRQSATVRTDTTTVDGLSDQFV
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEECCCCCEECCCCCCEE
IDVGPEDELMWARDGVQESQMRKLKIGQIPFEGSLDLHGMSVEKARETLWAFLAEATRFE
EEECCCCCEEEHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEE
IRCVRVTHGKAVRLDGKRPMIKSHVNTWLRQHAQVLGFCSCQAKHGGAGAVYVMLKRTMM
EEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
EGRDE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]