| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77457933
Identifier: 77457933
GI number: 77457933
Start: 1902038
End: 1902964
Strand: Reverse
Name: 77457933
Synonym: Pfl01_1706
Alternate gene names: NA
Gene position: 1902964-1902038 (Counterclockwise)
Preceding gene: 77457936
Following gene: 77457932
Centisome position: 29.56
GC content: 61.06
Gene sequence:
>927_bases GTGAGCGCTGACTACCCACGCGACCTGATCGGTTACGGCAGTAACCCTCCTCACCCACACTGGCCGGGCAATGCCCGGCT CGCCCTGTCGTTCGTACTCAATTACGAAGAAGGCGGCGAGCGCAACATCCTGCACGGCGACAAAGAATCGGAAGCCTTCC TCTCGGAAATGGTCGCGGCCCAGCCTCTGCAAGGCGCGCGCAACATGAGCATGGAATCGCTTTACGAGTATGGCAGCCGT GCCGGCGTCTGGCGGATCCTGAAACTGTTCAAGGAATTCGACATTCCGCTGACCATCTTCGCCGTGGCCATGGCCGCCCA ACGTCACCCGGACGTGATCCGCGCGATGGTCGCGGCCGGTCACGAGATCTGCAGCCACGGTTACCGCTGGATCGACTACC AGTACATGGACGAGGCGCAGGAACGCGAGCACATGCTCGAAGCGATCCGCATCCTCACCGAACTCACCGGCGAACGCCCG CTGGGCTGGTACACCGGTCGCACCGGCCCGAACACCCGTCGCCTGGTGATGGAAGAAGGCGGTTTCCTCTACGACTGCGA CACCTATGACGACGACCTGCCCTACTGGGAACCGAACAACCCGACCGGCAAGCCGCACCTGGTGATCCCGTACACCCTGG ACACCAACGACATGCGCTTCACCCAGGTCCAGGGTTTCAACAAGGGCGACGATTTCTTCGAATACCTCAAGGATGCGTTC GACGTGCTGTATGCCGAAGGCGCCGAAGCACCGAAGATGCTATCGATCGGCCTGCACTGCCGTCTGATCGGCCGTCCGGC GCGTCTGGCTTCGCTTAAGCGCTTTATCGAATACGCTAAAAGTCATGAACAGGTGTGGTTCAGCCGTCGCGTCGACATCG CACGTCACTGGCACGAAACCCACCCGTACCAAGGGGCTGCCAAATGA
Upstream 100 bases:
>100_bases AATAAAGTTGTATACAATCAGCCCATCGCTGTGACGCCAGCCTGCCATCCAAACTTCAGGGCGCCACACAATCTGTCAAC GAATAAGAAGGAAGACTGCA
Downstream 100 bases:
>100_bases GCACCTTTCAAACCCTGCAACCGTCGACCCTGAGCCGCGACGCCTTCGTCAAAGCCTTCGCCGACATCTACGAACATTCG CCATGGGTGGCCGAGAAGGC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Urate Catabolism Protein; Polysaccharide Deacetylase Family Protein; Chitin Deacetylase; Xylanase/Chitin Deacetylase; Chitooligosaccharide Deacetylase; Polysaccharide Deacetylase Family; Chitooligosaccharide Deacetylase Protein; Polysaccharide Deacetylase Domain Protein; Hydrolase; Polysaccharide Deacetylase Protein Pda4B; Carbohydrate Esterase Family 4 Domain Protein; Chitinase; Deacetylase Protein; Polysaccharide Deacetylase Domain-Containing Protein; Allantoinase; Uricase; Saccharide Deacetylase Slightly; Cyclic Imide Hydrolase; Deacetylase
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MSADYPRDLIGYGSNPPHPHWPGNARLALSFVLNYEEGGERNILHGDKESEAFLSEMVAAQPLQGARNMSMESLYEYGSR AGVWRILKLFKEFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERP LGWYTGRTGPNTRRLVMEEGGFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDTNDMRFTQVQGFNKGDDFFEYLKDAF DVLYAEGAEAPKMLSIGLHCRLIGRPARLASLKRFIEYAKSHEQVWFSRRVDIARHWHETHPYQGAAK
Sequences:
>Translated_308_residues MSADYPRDLIGYGSNPPHPHWPGNARLALSFVLNYEEGGERNILHGDKESEAFLSEMVAAQPLQGARNMSMESLYEYGSR AGVWRILKLFKEFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERP LGWYTGRTGPNTRRLVMEEGGFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDTNDMRFTQVQGFNKGDDFFEYLKDAF DVLYAEGAEAPKMLSIGLHCRLIGRPARLASLKRFIEYAKSHEQVWFSRRVDIARHWHETHPYQGAAK >Mature_307_residues SADYPRDLIGYGSNPPHPHWPGNARLALSFVLNYEEGGERNILHGDKESEAFLSEMVAAQPLQGARNMSMESLYEYGSRA GVWRILKLFKEFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERPL GWYTGRTGPNTRRLVMEEGGFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDTNDMRFTQVQGFNKGDDFFEYLKDAFD VLYAEGAEAPKMLSIGLHCRLIGRPARLASLKRFIEYAKSHEQVWFSRRVDIARHWHETHPYQGAAK
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35451; Mature: 35320
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSADYPRDLIGYGSNPPHPHWPGNARLALSFVLNYEEGGERNILHGDKESEAFLSEMVAA CCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH QPLQGARNMSMESLYEYGSRAGVWRILKLFKEFDIPLTIFAVAMAAQRHPDVIRAMVAAG CCCCHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHH HEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERPLGWYTGRTGPNTRRLVMEEG HHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEEEECC GFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDTNDMRFTQVQGFNKGDDFFEYLKDAF CEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHH DVLYAEGAEAPKMLSIGLHCRLIGRPARLASLKRFIEYAKSHEQVWFSRRVDIARHWHET HHHHHCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HPYQGAAK CCCCCCCC >Mature Secondary Structure SADYPRDLIGYGSNPPHPHWPGNARLALSFVLNYEEGGERNILHGDKESEAFLSEMVAA CCCCCCHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH QPLQGARNMSMESLYEYGSRAGVWRILKLFKEFDIPLTIFAVAMAAQRHPDVIRAMVAAG CCCCHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHH HEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERPLGWYTGRTGPNTRRLVMEEG HHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEEEECC GFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDTNDMRFTQVQGFNKGDDFFEYLKDAF CEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHH DVLYAEGAEAPKMLSIGLHCRLIGRPARLASLKRFIEYAKSHEQVWFSRRVDIARHWHET HHHHHCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC HPYQGAAK CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA