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The map label for this gene is sdhD [H]

Identifier: 77457838

GI number: 77457838

Start: 1799931

End: 1800299

Strand: Direct

Name: sdhD [H]

Synonym: Pfl01_1611

Alternate gene names: 77457838

Gene position: 1799931-1800299 (Clockwise)

Preceding gene: 77457837

Following gene: 77457839

Centisome position: 27.96

GC content: 59.08

Gene sequence:

>369_bases
ATGGTAACCAGCGTTACAAACCTTTCGCGTTCGGGCCTCTATGACTGGATGGCGCAGCGTGTGTCTGCGGTCGTTCTCGC
GGCTTATTTCATATTCCTGATCGGCTACCTCGCCGCGAACCCGGGCATTGGCTACGACCAATGGCACGGCCTGTTCGCCC
ACAACGGAATGCGTATCTTCAGTCTGCTGGCACTGGTTGCCCTGGGCGCTCACGCCTGGGTCGGCATGTGGACCATCGCG
ACCGACTACCTGACGCCAATGGCGCTGGGCAAGTCCGCGACTGCAGTACGTTTCCTTTTCCAGGCAGTATGCGGCGTCGC
GATGTTCGCTTACTTCGTCTGGGGTGTGCAGATTCTCTGGGGTATCTGA

Upstream 100 bases:

>100_bases
TGGACATGGGCATCGGTGAGACGCTGGAAGGCGGCCGCCTGGGCTCGAAACTGATCATCGCCGTTTCCGTGGTGCTGATC
GTTCTGGCAGGAGTTTGGAT

Downstream 100 bases:

>100_bases
TTCATGGCTAACATTCCAACGATTTCTTTCGACGCCATCATTATTGGTGGCGGCGGTGCCGGCATGCGCGCAGCGCTGCA
ACTGGCACAGGGCGGTCACA

Product: succinate dehydrogenase subunit D

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MVTSVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYLAANPGIGYDQWHGLFAHNGMRIFSLLALVALGAHAWVGMWTIA
TDYLTPMALGKSATAVRFLFQAVCGVAMFAYFVWGVQILWGI

Sequences:

>Translated_122_residues
MVTSVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYLAANPGIGYDQWHGLFAHNGMRIFSLLALVALGAHAWVGMWTIA
TDYLTPMALGKSATAVRFLFQAVCGVAMFAYFVWGVQILWGI
>Mature_122_residues
MVTSVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYLAANPGIGYDQWHGLFAHNGMRIFSLLALVALGAHAWVGMWTIA
TDYLTPMALGKSATAVRFLFQAVCGVAMFAYFVWGVQILWGI

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=122, Percent_Identity=36.8852459016393, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13400; Mature: 13400

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTSVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYLAANPGIGYDQWHGLFAHNGMRIF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHH
SLLALVALGAHAWVGMWTIATDYLTPMALGKSATAVRFLFQAVCGVAMFAYFVWGVQILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GI
CC
>Mature Secondary Structure
MVTSVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYLAANPGIGYDQWHGLFAHNGMRIF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHH
SLLALVALGAHAWVGMWTIATDYLTPMALGKSATAVRFLFQAVCGVAMFAYFVWGVQILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]