| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is phhC [H]
Identifier: 77457724
GI number: 77457724
Start: 1675667
End: 1676860
Strand: Reverse
Name: phhC [H]
Synonym: Pfl01_1497
Alternate gene names: 77457724
Gene position: 1676860-1675667 (Counterclockwise)
Preceding gene: 77457725
Following gene: 77457723
Centisome position: 26.04
GC content: 64.49
Gene sequence:
>1194_bases ATGCACTTCGACGCCATCGGCCGAGTGCCCGGCGACCCGATCCTCGGTCTGATGGAGGCCTACGCGCAGGATTCCAACCC GCGCAAGTTCGACCTTGGCGTGGGCGTCTACAAGGATGCCCAGGGCCTGACGCCGATCCCCGAGGCGGTGAAAATCGCCG AGGCGCGTCTGGTCGAGAGCCAGGACACCAAGACCTACATCGGTGGCCACGGCAATCCGCTGTTCGGCAAGGTCATCAAT GAGCTGGTGCTTGGCGTCGATTCGAAGCTGATCGCCGAGCAACGCGCCGGCGCCACCCAAACGCCGGGCGGTACTGGCGC CCTGCGTCTGGCGGCGGACTTCATCGCCCAATGCCTGCCGGGCAAGGGTGTATGGCTGAGCAACCCGACCTGGCCGATCC ACGAAACGATTTTCGCGGCCGCCGGGGTCAAGATCAGCCATTACCCGTACGTCGGCAGCGACAACCGCCTCGACGTCGAT GCGATGCTCGCCGTGCTCAACGAAGTGCCGAAAGGTGATGTGGTGCTGCTGCACGCGTGCTGCCACAACCCGACCGGTTT CGACCTGAGCCACGACGACTGGCAGCGAGTGCTGGAGGTAGTACGCCGCCGTGACCTGCTGCCGCTGATCGACTTTGCCT ACCAGGGCTTTGGCGACGGTCTGGAGCAGGATGCATGGTCGACCCGGCTGTTCGCCGCCGAGTTGCCCGAGCTGCTGATC ACCAGCTCCTGCTCGAAGAACTTCGGTTTATATCGCGACCGCACCGGTGCGTTGATCGTCAGCGCGAAAACCGCTGACAA GCTGATCGACATCCGCAGCCAGTTGGCGCACATCGCCCGCAACCTGTGGTCAACGCCACCGGATCACGGCGCGGCTGTGG TCGCCACGATCCTCGCCGACCCGGAGCTGAAACGCCGCTGGGCCGACGAAGTGGAAGCCATGCGTCTGCGCATCGCCCAG TTGCGCAGCGGACTGGTGGAAGCGCTGGAACCGCACGGCCTGCGCGAGCGTTTTGCGCACATCGGCGTGCAACGCGGGAT GTTCTCCTACACCGGACTGTCGCCGGAACAGGTGAAGAACCTGCGTGAGCATCACAGCGTGTACATGGTCAGCTCGGGCC GGGCCAACGTTGCCGGGATTGATGCGACGCGTCTCGACCTGCTGGCCGAAGCGATCGCCAACGTCTGCAAATAG
Upstream 100 bases:
>100_bases TGACCTGGTGGAGCCACTCCATCAAAGGCCTGCATCGCAACGACTTCATCATGGCCGCGCGCACTGACGAAGTGGCCAAG ACCGCAGAAGGACGCAAGTA
Downstream 100 bases:
>100_bases TCCCAACTGTGGGAGCGAGCAGGCTCGCTCCCACATCTGCCCTGCGTCACCCTGTCGCACTTGTCTAGACAATCCCGCCC GTCGAACCAAATGGATTTAA
Product: aromatic amino acid aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MHFDAIGRVPGDPILGLMEAYAQDSNPRKFDLGVGVYKDAQGLTPIPEAVKIAEARLVESQDTKTYIGGHGNPLFGKVIN ELVLGVDSKLIAEQRAGATQTPGGTGALRLAADFIAQCLPGKGVWLSNPTWPIHETIFAAAGVKISHYPYVGSDNRLDVD AMLAVLNEVPKGDVVLLHACCHNPTGFDLSHDDWQRVLEVVRRRDLLPLIDFAYQGFGDGLEQDAWSTRLFAAELPELLI TSSCSKNFGLYRDRTGALIVSAKTADKLIDIRSQLAHIARNLWSTPPDHGAAVVATILADPELKRRWADEVEAMRLRIAQ LRSGLVEALEPHGLRERFAHIGVQRGMFSYTGLSPEQVKNLREHHSVYMVSSGRANVAGIDATRLDLLAEAIANVCK
Sequences:
>Translated_397_residues MHFDAIGRVPGDPILGLMEAYAQDSNPRKFDLGVGVYKDAQGLTPIPEAVKIAEARLVESQDTKTYIGGHGNPLFGKVIN ELVLGVDSKLIAEQRAGATQTPGGTGALRLAADFIAQCLPGKGVWLSNPTWPIHETIFAAAGVKISHYPYVGSDNRLDVD AMLAVLNEVPKGDVVLLHACCHNPTGFDLSHDDWQRVLEVVRRRDLLPLIDFAYQGFGDGLEQDAWSTRLFAAELPELLI TSSCSKNFGLYRDRTGALIVSAKTADKLIDIRSQLAHIARNLWSTPPDHGAAVVATILADPELKRRWADEVEAMRLRIAQ LRSGLVEALEPHGLRERFAHIGVQRGMFSYTGLSPEQVKNLREHHSVYMVSSGRANVAGIDATRLDLLAEAIANVCK >Mature_397_residues MHFDAIGRVPGDPILGLMEAYAQDSNPRKFDLGVGVYKDAQGLTPIPEAVKIAEARLVESQDTKTYIGGHGNPLFGKVIN ELVLGVDSKLIAEQRAGATQTPGGTGALRLAADFIAQCLPGKGVWLSNPTWPIHETIFAAAGVKISHYPYVGSDNRLDVD AMLAVLNEVPKGDVVLLHACCHNPTGFDLSHDDWQRVLEVVRRRDLLPLIDFAYQGFGDGLEQDAWSTRLFAAELPELLI TSSCSKNFGLYRDRTGALIVSAKTADKLIDIRSQLAHIARNLWSTPPDHGAAVVATILADPELKRRWADEVEAMRLRIAQ LRSGLVEALEPHGLRERFAHIGVQRGMFSYTGLSPEQVKNLREHHSVYMVSSGRANVAGIDATRLDLLAEAIANVCK
Specific function: Unknown
COG id: COG1448
COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI73486658, Length=392, Percent_Identity=39.030612244898, Blast_Score=280, Evalue=1e-75, Organism=Homo sapiens, GI4504067, Length=388, Percent_Identity=39.4329896907216, Blast_Score=276, Evalue=2e-74, Organism=Homo sapiens, GI117414139, Length=384, Percent_Identity=27.6041666666667, Blast_Score=157, Evalue=2e-38, Organism=Escherichia coli, GI1787159, Length=394, Percent_Identity=47.4619289340102, Blast_Score=368, Evalue=1e-103, Organism=Escherichia coli, GI1790488, Length=395, Percent_Identity=41.7721518987342, Blast_Score=315, Evalue=3e-87, Organism=Caenorhabditis elegans, GI25147133, Length=390, Percent_Identity=40, Blast_Score=302, Evalue=2e-82, Organism=Caenorhabditis elegans, GI71981858, Length=397, Percent_Identity=37.5314861460957, Blast_Score=300, Evalue=6e-82, Organism=Caenorhabditis elegans, GI17569539, Length=394, Percent_Identity=35.5329949238579, Blast_Score=265, Evalue=4e-71, Organism=Caenorhabditis elegans, GI17569537, Length=392, Percent_Identity=29.5918367346939, Blast_Score=196, Evalue=2e-50, Organism=Caenorhabditis elegans, GI25147136, Length=204, Percent_Identity=40.1960784313725, Blast_Score=162, Evalue=2e-40, Organism=Caenorhabditis elegans, GI17550384, Length=262, Percent_Identity=32.0610687022901, Blast_Score=155, Evalue=4e-38, Organism=Saccharomyces cerevisiae, GI6323055, Length=406, Percent_Identity=36.2068965517241, Blast_Score=271, Evalue=2e-73, Organism=Saccharomyces cerevisiae, GI6322743, Length=431, Percent_Identity=31.322505800464, Blast_Score=214, Evalue=2e-56, Organism=Drosophila melanogaster, GI24654046, Length=387, Percent_Identity=39.2764857881137, Blast_Score=279, Evalue=2e-75, Organism=Drosophila melanogaster, GI19922362, Length=387, Percent_Identity=39.2764857881137, Blast_Score=278, Evalue=4e-75, Organism=Drosophila melanogaster, GI24580970, Length=398, Percent_Identity=37.6884422110553, Blast_Score=277, Evalue=8e-75, Organism=Drosophila melanogaster, GI24580972, Length=398, Percent_Identity=37.6884422110553, Blast_Score=277, Evalue=8e-75, Organism=Drosophila melanogaster, GI19920542, Length=391, Percent_Identity=38.1074168797954, Blast_Score=276, Evalue=2e-74,
Paralogues:
None
Copy number: 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR000796 - InterPro: IPR004838 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.57 [H]
Molecular weight: Translated: 43319; Mature: 43319
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFDAIGRVPGDPILGLMEAYAQDSNPRKFDLGVGVYKDAQGLTPIPEAVKIAEARLVES CCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHCC QDTKTYIGGHGNPLFGKVINELVLGVDSKLIAEQRAGATQTPGGTGALRLAADFIAQCLP CCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC GKGVWLSNPTWPIHETIFAAAGVKISHYPYVGSDNRLDVDAMLAVLNEVPKGDVVLLHAC CCCEECCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC CHNPTGFDLSHDDWQRVLEVVRRRDLLPLIDFAYQGFGDGLEQDAWSTRLFAAELPELLI CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH TSSCSKNFGLYRDRTGALIVSAKTADKLIDIRSQLAHIARNLWSTPPDHGAAVVATILAD HHCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC PELKRRWADEVEAMRLRIAQLRSGLVEALEPHGLRERFAHIGVQRGMFSYTGLSPEQVKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHH LREHHSVYMVSSGRANVAGIDATRLDLLAEAIANVCK HHHHCCEEEEECCCCCEECCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MHFDAIGRVPGDPILGLMEAYAQDSNPRKFDLGVGVYKDAQGLTPIPEAVKIAEARLVES CCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHCC QDTKTYIGGHGNPLFGKVINELVLGVDSKLIAEQRAGATQTPGGTGALRLAADFIAQCLP CCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC GKGVWLSNPTWPIHETIFAAAGVKISHYPYVGSDNRLDVDAMLAVLNEVPKGDVVLLHAC CCCEECCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC CHNPTGFDLSHDDWQRVLEVVRRRDLLPLIDFAYQGFGDGLEQDAWSTRLFAAELPELLI CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH TSSCSKNFGLYRDRTGALIVSAKTADKLIDIRSQLAHIARNLWSTPPDHGAAVVATILAD HHCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC PELKRRWADEVEAMRLRIAQLRSGLVEALEPHGLRERFAHIGVQRGMFSYTGLSPEQVKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHH LREHHSVYMVSSGRANVAGIDATRLDLLAEAIANVCK HHHHCCEEEEECCCCCEECCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8108417; 10984043 [H]