| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ycgI [H]
Identifier: 77457566
GI number: 77457566
Start: 1516145
End: 1516786
Strand: Reverse
Name: ycgI [H]
Synonym: Pfl01_1339
Alternate gene names: 77457566
Gene position: 1516786-1516145 (Counterclockwise)
Preceding gene: 77457567
Following gene: 77457565
Centisome position: 23.56
GC content: 61.68
Gene sequence:
>642_bases ATGTCAGTTGCTATCGCCACTTCGCAGAAACAACCCGACACTGCGGTGTACCGCGCCACCATTCCCGCCGGCGAACCCTG GCTGATGGAGGTCAAGGCCGGCCAGACCCTGCGCATTCTCGATCTGGAAGGCAACCAAGCGGTGGACACCCTGTTTTACA GCACCGCCAATCCCCGCGAGCGCTACGACGTGCAACGCACATTGCGCCGCCAGAACAGCGTGTACCTGAGCACCGGCAGC GTGCTGTATTCCAATCTCGGCAAACCGATGCTGACCATCATCGCCGACACCTGCGGCCGCCACGACACCCTCGGCGGCGC CTGCGCGCAAGAGAGCAACACCGTGCGTTACGCCCTGGAAAAACGCTACATGCACAGCTGCCGCGACAACTACCTGCGCG CCTCCGCCCACGACGGGCGCCTGAACAAAGGTGATATCGGGCCGAACATCAATTTCTTCATGAACGTACCGGTGACCGCC GAGGGCGGCCTGACCTTCGAGGACGGCATTTCCGCCCCCGGCAAATATGTCGACCTGCGCGCCGAGATGGACGTGATCGT GCTGATCTCCAACTGTCCGCAACTGAACAACCCGTGCAACGCCTACAACCCGACACCTGCGGAGCTACTGGTATGGAACT GA
Upstream 100 bases:
>100_bases ACGCCGACGCCAGCGTCGCCGAGCACTGCCGTACCTCGCGCCCGGAGAACGAGCGCGGCTTTATCAACACCGACCGTTTG TTCGCCTGAGGATCATCGCC
Downstream 100 bases:
>100_bases CATTCGTCCGTCTGCGCCGCTGGTTGTTTGCCCTGTGCCAGGCCCGTTCCGGCCAGTGTCTGAAATCCCCAAAACACCCC TGAACCCTGTGGGAGCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSVAIATSQKQPDTAVYRATIPAGEPWLMEVKAGQTLRILDLEGNQAVDTLFYSTANPRERYDVQRTLRRQNSVYLSTGS VLYSNLGKPMLTIIADTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRASAHDGRLNKGDIGPNINFFMNVPVTA EGGLTFEDGISAPGKYVDLRAEMDVIVLISNCPQLNNPCNAYNPTPAELLVWN
Sequences:
>Translated_213_residues MSVAIATSQKQPDTAVYRATIPAGEPWLMEVKAGQTLRILDLEGNQAVDTLFYSTANPRERYDVQRTLRRQNSVYLSTGS VLYSNLGKPMLTIIADTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRASAHDGRLNKGDIGPNINFFMNVPVTA EGGLTFEDGISAPGKYVDLRAEMDVIVLISNCPQLNNPCNAYNPTPAELLVWN >Mature_212_residues SVAIATSQKQPDTAVYRATIPAGEPWLMEVKAGQTLRILDLEGNQAVDTLFYSTANPRERYDVQRTLRRQNSVYLSTGSV LYSNLGKPMLTIIADTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRASAHDGRLNKGDIGPNINFFMNVPVTAE GGLTFEDGISAPGKYVDLRAEMDVIVLISNCPQLNNPCNAYNPTPAELLVWN
Specific function: Unknown
COG id: COG3665
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018959 [H]
Pfam domain/function: PF09347 DUF1989 [H]
EC number: NA
Molecular weight: Translated: 23520; Mature: 23389
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVAIATSQKQPDTAVYRATIPAGEPWLMEVKAGQTLRILDLEGNQAVDTLFYSTANPRE CEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCCCCHH RYDVQRTLRRQNSVYLSTGSVLYSNLGKPMLTIIADTCGRHDTLGGACAQESNTVRYALE HHHHHHHHHHCCCEEEEECHHHHHHCCCHHEEHEEHHCCCCCCCCCCCCCCCCHHHHHHH KRYMHSCRDNYLRASAHDGRLNKGDIGPNINFFMNVPVTAEGGLTFEDGISAPGKYVDLR HHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEECCEEECCCEEECCCCCCCCCEEEEE AEMDVIVLISNCPQLNNPCNAYNPTPAELLVWN CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEC >Mature Secondary Structure SVAIATSQKQPDTAVYRATIPAGEPWLMEVKAGQTLRILDLEGNQAVDTLFYSTANPRE EEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCCCCHH RYDVQRTLRRQNSVYLSTGSVLYSNLGKPMLTIIADTCGRHDTLGGACAQESNTVRYALE HHHHHHHHHHCCCEEEEECHHHHHHCCCHHEEHEEHHCCCCCCCCCCCCCCCCHHHHHHH KRYMHSCRDNYLRASAHDGRLNKGDIGPNINFFMNVPVTAEGGLTFEDGISAPGKYVDLR HHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEECCEEECCCEEECCCCCCCCCEEEEE AEMDVIVLISNCPQLNNPCNAYNPTPAELLVWN CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 10568751 [H]