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The map label for this gene is ygiP [C]

Identifier: 77457351

GI number: 77457351

Start: 1301206

End: 1302102

Strand: Reverse

Name: ygiP [C]

Synonym: Pfl01_1124

Alternate gene names: 77457351

Gene position: 1302102-1301206 (Counterclockwise)

Preceding gene: 77457360

Following gene: 77457327

Centisome position: 20.22

GC content: 60.31

Gene sequence:

>897_bases
ATGTCCGAAAATCGCTGGGAAGGTATCGACGAGTTCGTCGCCGTTGCCGAATGCAGTCAGTTCACAGCCGCTGCCGAACG
CCTGGGCGTTTCTTCCTCGCACATCAGTCGACAAATCGTACGACTGGAAGAGCGTTTGCAGACGCGACTGCTGTATCGCA
GCACCCGGCGCGTCACCCTGACCGAGGCCGGCCAGACCTTTCTGCAACATTGCCAACGTCTGCAGGACGGACGCGAAGAA
GCCTTGCGCGCGGTCGGCGATCTGACCAGCGAACCCAAAGGCATGCTGCGCATGACCTGTGCCGTGGCGTATGGCGAGCG
TTTCATTGTGCCGCTGGTGACGCGGTTCATGGGGCACTACCCGCAACTGCGCATCGATATCGAACTGACCAACCGGCAAC
TCGATCTGGTGCATGAAGGCCTGGACCTGGCGATCCGTCTTGGCCGGCTTCAGGACTCCCGGTTGGTGGCGACCCGGCTG
GCACCGCGGCGCATGTATCTGTGTGCGTCGCCTTCCTACCTGGAACGGTACGGGCGCCCACACAGTTTGTCGGAACTGGG
GCGGCACAATTGCCTGATCGGCAGCTCGGATATCTGGCAACTTGAACAAAACGGGCGGGAATTTTCCCAGCGGGTGCAGG
GAAACTGGCGCTGCAACAGTGGGCAAGCGGTGCTGGATGCGGCGCTACAAGGCGTCGGACTGTGTCAGTTGCCTGACTAT
TACGTGCTGGAACATCTGCACAGCGGTGCGTTGGTTTCTTTGTTGGAGACGCATCAACCGCCGAATACGGCGGTGTGGGC
GCTGTATCCGCAGCAGCGGCACCTGTCGCCCAAGGTGCGCAAACTGGTGGATTTTCTCAAGGAAGGTTTGGCCGAACGGC
CGGAATATCGAGCTTAA

Upstream 100 bases:

>100_bases
ATCCATTGAATAAAAAACCAGACGGTCAGTGTAGTTCAGCGCCGCTTGATGAATAATCCGGGCAAAAGCAAAACATTATT
GCCATACAGGGATAATCCCC

Downstream 100 bases:

>100_bases
CGACGGTTGGTCCAGCGCTGACGCAACCATTCGAGGTCTTCGGGGCGGGTGACTTTCAAGTTATCCGCGCGGCCCTCGAT
CAGACGCGGCGCCATGCCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREE
ALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHYPQLRIDIELTNRQLDLVHEGLDLAIRLGRLQDSRLVATRL
APRRMYLCASPSYLERYGRPHSLSELGRHNCLIGSSDIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDY
YVLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFLKEGLAERPEYRA

Sequences:

>Translated_298_residues
MSENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREE
ALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHYPQLRIDIELTNRQLDLVHEGLDLAIRLGRLQDSRLVATRL
APRRMYLCASPSYLERYGRPHSLSELGRHNCLIGSSDIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDY
YVLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFLKEGLAERPEYRA
>Mature_297_residues
SENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREEA
LRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHYPQLRIDIELTNRQLDLVHEGLDLAIRLGRLQDSRLVATRLA
PRRMYLCASPSYLERYGRPHSLSELGRHNCLIGSSDIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYY
VLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFLKEGLAERPEYRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=299, Percent_Identity=35.1170568561873, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=35.5400696864112, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=30.9027777777778, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=31.1643835616438, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=31.8021201413428, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=30.2816901408451, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=28.7162162162162, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1790011, Length=260, Percent_Identity=24.2307692307692, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786448, Length=266, Percent_Identity=25.187969924812, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=28.3185840707965, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789173, Length=244, Percent_Identity=28.2786885245902, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=30.3225806451613, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=24.904214559387, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34019; Mature: 33888

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
TEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
PQLRIDIELTNRQLDLVHEGLDLAIRLGRLQDSRLVATRLAPRRMYLCASPSYLERYGRP
CEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHEEEECCCHHHHHCCCC
HSLSELGRHNCLIGSSDIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDY
CCHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCHH
YVLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFLKEGLAERPEYRA
HHHHHHCCCHHHHHHHHCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SENRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQIVRLEERLQTRLLYRSTRRVTL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
TEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTCAVAYGERFIVPLVTRFMGHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
PQLRIDIELTNRQLDLVHEGLDLAIRLGRLQDSRLVATRLAPRRMYLCASPSYLERYGRP
CEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHEEEECCCHHHHHCCCC
HSLSELGRHNCLIGSSDIWQLEQNGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDY
CCHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCHH
YVLEHLHSGALVSLLETHQPPNTAVWALYPQQRHLSPKVRKLVDFLKEGLAERPEYRA
HHHHHHCCCHHHHHHHHCCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]