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The map label for this gene is ywbI [H]

Identifier: 77457277

GI number: 77457277

Start: 1217097

End: 1218011

Strand: Reverse

Name: ywbI [H]

Synonym: Pfl01_1050

Alternate gene names: 77457277

Gene position: 1218011-1217097 (Counterclockwise)

Preceding gene: 77457293

Following gene: 255961278

Centisome position: 18.92

GC content: 63.61

Gene sequence:

>915_bases
ATGATGACCTTGCGTCAGATCCGCCATTTCATCGCCGTGGCCGAGACCGGCTCGATCTCCGCCGCCGCGCAAACCGCGTT
CATTTCCCAATCGACCCTGACCCTGGCCATCCAGCAACTGGAGGAAGAGATCGGTGTCAGCCTGTTCAACCGCCACGCCA
AGGGCATGACGCTGACCCATCAGGGCCACCAGTTCCTGCGCCAGGCGCACCTGATTCTGGCGACCGTAGACAACGCCAAA
CGCAGCCTGCAACAGAGCACCGATCAGGTCGCCGGGCAGCTGATCGTCGGCGTGACCAGTCTGGTGGCCGGTTATTACCT
GGCGGATTTGCTGACCCGTTTCCAGCGCGCCTATCCCAATGTCGAGATCCGGGTGATGGAGGACGAGCGGCCGTACATCG
AGCATTTGCTGGTCAGCGGCGAGATCGATGTCGGTGTGCTGATCCTGTCCAACCTCGAAGACCGCCACGCTTTGCAGACC
GAAGTGCTGACCCATTCGCCGCACCGTTTGTGGCTACCGGCCCAGCATCCGCTGCTGGAACACGACAGCATCAACCTCGC
CGATGTCGCCCGGGAGCCGTTGATTCAGCTGAACGTCGACGAGATGGATCGCAACGCCCAACGCCTGTGGCGCGGGGCCG
GACTGCAGCCGAAGATCACCCTCAGAACTGCGTCCACCGAGGCCGTACGAAGTCTGGTCGCGGCGGGTCTCGGCGTTTCG
ATCCAGCCCGACATGACCTACCGCCCTTGGTCGCTGGAAGGCGACATCATCGAAGCCCGGCCGATTGCCGACCTCAACCA
GACCCTCGACGTCGGCCTGGCCTGGCGTCGTGGCACGGCGCGACCCGCACTGGTCGACCCGTTCCTGACCGTGGCCCGCG
AACAGCCCCACGGCGGACGCAAGCCATCTATTTAA

Upstream 100 bases:

>100_bases
GAGTGTGCTTCCAGATGTTGCCTGGCTCAGAGCAGCCCTTCGCGAAAATAGATATACACTCGAGGCAATCTATAAAAACC
GCCCACTGGGTAAACCTTCC

Downstream 100 bases:

>100_bases
TCGAATGCCACCTTCAATATTTAGAATTTGTCGACCCCGGAGCCGCGCACTAGTCTTGCTGCATCGATAAGACGGTCGGC
TCCCGGAACAGGGAGCAACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MMTLRQIRHFIAVAETGSISAAAQTAFISQSTLTLAIQQLEEEIGVSLFNRHAKGMTLTHQGHQFLRQAHLILATVDNAK
RSLQQSTDQVAGQLIVGVTSLVAGYYLADLLTRFQRAYPNVEIRVMEDERPYIEHLLVSGEIDVGVLILSNLEDRHALQT
EVLTHSPHRLWLPAQHPLLEHDSINLADVAREPLIQLNVDEMDRNAQRLWRGAGLQPKITLRTASTEAVRSLVAAGLGVS
IQPDMTYRPWSLEGDIIEARPIADLNQTLDVGLAWRRGTARPALVDPFLTVAREQPHGGRKPSI

Sequences:

>Translated_304_residues
MMTLRQIRHFIAVAETGSISAAAQTAFISQSTLTLAIQQLEEEIGVSLFNRHAKGMTLTHQGHQFLRQAHLILATVDNAK
RSLQQSTDQVAGQLIVGVTSLVAGYYLADLLTRFQRAYPNVEIRVMEDERPYIEHLLVSGEIDVGVLILSNLEDRHALQT
EVLTHSPHRLWLPAQHPLLEHDSINLADVAREPLIQLNVDEMDRNAQRLWRGAGLQPKITLRTASTEAVRSLVAAGLGVS
IQPDMTYRPWSLEGDIIEARPIADLNQTLDVGLAWRRGTARPALVDPFLTVAREQPHGGRKPSI
>Mature_304_residues
MMTLRQIRHFIAVAETGSISAAAQTAFISQSTLTLAIQQLEEEIGVSLFNRHAKGMTLTHQGHQFLRQAHLILATVDNAK
RSLQQSTDQVAGQLIVGVTSLVAGYYLADLLTRFQRAYPNVEIRVMEDERPYIEHLLVSGEIDVGVLILSNLEDRHALQT
EVLTHSPHRLWLPAQHPLLEHDSINLADVAREPLIQLNVDEMDRNAQRLWRGAGLQPKITLRTASTEAVRSLVAAGLGVS
IQPDMTYRPWSLEGDIIEARPIADLNQTLDVGLAWRRGTARPALVDPFLTVAREQPHGGRKPSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=279, Percent_Identity=32.258064516129, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI157672245, Length=236, Percent_Identity=30.9322033898305, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790399, Length=279, Percent_Identity=26.8817204301075, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787601, Length=184, Percent_Identity=30.9782608695652, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788887, Length=305, Percent_Identity=27.2131147540984, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=25.2066115702479, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI87082132, Length=307, Percent_Identity=25.7328990228013, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787530, Length=254, Percent_Identity=24.8031496062992, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081904, Length=192, Percent_Identity=30.7291666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787806, Length=287, Percent_Identity=26.4808362369338, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788296, Length=237, Percent_Identity=26.1603375527426, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786713, Length=308, Percent_Identity=26.9480519480519, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790208, Length=256, Percent_Identity=27.34375, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693105, Length=256, Percent_Identity=24.609375, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788626, Length=243, Percent_Identity=30.0411522633745, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790262, Length=307, Percent_Identity=25.0814332247557, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=255, Percent_Identity=23.5294117647059, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787949, Length=279, Percent_Identity=24.7311827956989, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789204, Length=263, Percent_Identity=23.9543726235741, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786401, Length=120, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789173, Length=144, Percent_Identity=27.0833333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33774; Mature: 33774

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTLRQIRHFIAVAETGSISAAAQTAFISQSTLTLAIQQLEEEIGVSLFNRHAKGMTLTH
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEH
QGHQFLRQAHLILATVDNAKRSLQQSTDQVAGQLIVGVTSLVAGYYLADLLTRFQRAYPN
HHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VEIRVMEDERPYIEHLLVSGEIDVGVLILSNLEDRHALQTEVLTHSPHRLWLPAQHPLLE
EEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
HDSINLADVAREPLIQLNVDEMDRNAQRLWRGAGLQPKITLRTASTEAVRSLVAAGLGVS
CCCCCHHHHHHCCEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCE
IQPDMTYRPWSLEGDIIEARPIADLNQTLDVGLAWRRGTARPALVDPFLTVAREQPHGGR
ECCCCCCCCCCCCCCEEECCCCCHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCC
KPSI
CCCC
>Mature Secondary Structure
MMTLRQIRHFIAVAETGSISAAAQTAFISQSTLTLAIQQLEEEIGVSLFNRHAKGMTLTH
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEH
QGHQFLRQAHLILATVDNAKRSLQQSTDQVAGQLIVGVTSLVAGYYLADLLTRFQRAYPN
HHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VEIRVMEDERPYIEHLLVSGEIDVGVLILSNLEDRHALQTEVLTHSPHRLWLPAQHPLLE
EEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
HDSINLADVAREPLIQLNVDEMDRNAQRLWRGAGLQPKITLRTASTEAVRSLVAAGLGVS
CCCCCHHHHHHCCEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCE
IQPDMTYRPWSLEGDIIEARPIADLNQTLDVGLAWRRGTARPALVDPFLTVAREQPHGGR
ECCCCCCCCCCCCCCEEECCCCCHHHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCC
KPSI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]