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The map label for this gene is ydcS [H]

Identifier: 77457275

GI number: 77457275

Start: 1214276

End: 1215427

Strand: Reverse

Name: ydcS [H]

Synonym: Pfl01_1048

Alternate gene names: 77457275

Gene position: 1215427-1214276 (Counterclockwise)

Preceding gene: 255961278

Following gene: 77457274

Centisome position: 18.88

GC content: 61.55

Gene sequence:

>1152_bases
ATGTTCGTGCACAAGACCGCACTGCTCAGTGCAATCACCATGGCCCTGCTGGCCAGCGCCAGCCTGCAGGCCGCCGAGCC
GCTGAAAGCCGTCGGCGCCGGCGAAGGCCAGCTGGATATCGTCGCCTGGCCCGGCTACATCGAACGCGGTGAAAGCGACA
AGGCCTACGACTGGGTGACCGGTTTCGAGAAGGAAACCGGCTGCAAGGTCAATGTGAAAACCGCCGCCACCTCTGACGAA
ATGGTCAGCCTGATGGCCAAGGGCGGTTACGACCTGGTGACCGCGTCGGGCGATGCCTCGTTGCGGTTGATCGTCGGCAA
GCGTGTGCAACCGATCAACACCGCGTTGATCCCGAACTGGAAATCCCTCGACCCGCGCCTGAAAGACGCACCGTGGTACG
TCGTCAACAACCAGACCTTCGGCACCCCGTACCAGTGGGGCCCGAACGTGCTGATGTACAACACCAACGTGTTCAAGACC
GCGCCGACCAGCTGGAACGTGGTGTTCGACGCGCAGAACCTGCCGGACGGCAAGCCGAACAAGGGCCGCGTGCAAGCCTA
CGACGGCCCGATCTACATCGCCGATGCGGCGCTGTACCTGAAATCCACCAAGCCTGAGCTGGGGATCAAGGATCCGTACC
AACTCACCGAAGATCAGTACAAGGCTGTGCTGGAACTGTTGCGCGCCCAGCAGAAGCTGATTCACCGCTACTGGCACGAC
ACCACGGTGCAGATGAGCGACTTCAAGAACGAAGGCGTGGTCGCGTCCAGCGCCTGGCCGTATCAGGTCAATGGGCTGAT
CAACGAGAAACAGCCGATCGCTTCGACCGTGCCGAAAGAAGGCGCCACCGGCTGGGCCGACACCACCATGCTGCACGCCG
AAGCCAAGCACCCGAACTGCGCGTACAAGTGGATGGACTGGTCGCTGCAACCGAAAGTCCAGGGTGATGTGGCGGCCTGG
TTCGGTTCGTTGCCGGCGGTTCCGGCGGCGTGTCAGGGCAGTGAGTTGCTCGGGGCTGAAGGCTGCAAGACCAACGGCTT
TGATCAGTTCGACAAGATCGCTTTCTGGAAAACCCCGCAGGCTGAGGGTGGGAAGTTTGTGCCGTATAGCCGGTGGACGC
AGGACTACATTGCGATTATGGGCGGTAGGTAG

Upstream 100 bases:

>100_bases
CACGGCCAGCATCTCTGACTACGCTAATAACAAGCCGACCACGGCATGCTTCACCGCGTTCACAACTGCCCCGACCATAA
TTTGAAGAAGAGGGTTCACC

Downstream 100 bases:

>100_bases
CACTCCGGAACGACTCGGTCTGCCCCCTTTCCCCTCGCCCCCCCTGGGGGAGAGGGCTGGGCGGGCGGCGTGCCGATGAG
GGGGTAGCTTTTGACTTTGC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MFVHKTALLSAITMALLASASLQAAEPLKAVGAGEGQLDIVAWPGYIERGESDKAYDWVTGFEKETGCKVNVKTAATSDE
MVSLMAKGGYDLVTASGDASLRLIVGKRVQPINTALIPNWKSLDPRLKDAPWYVVNNQTFGTPYQWGPNVLMYNTNVFKT
APTSWNVVFDAQNLPDGKPNKGRVQAYDGPIYIADAALYLKSTKPELGIKDPYQLTEDQYKAVLELLRAQQKLIHRYWHD
TTVQMSDFKNEGVVASSAWPYQVNGLINEKQPIASTVPKEGATGWADTTMLHAEAKHPNCAYKWMDWSLQPKVQGDVAAW
FGSLPAVPAACQGSELLGAEGCKTNGFDQFDKIAFWKTPQAEGGKFVPYSRWTQDYIAIMGGR

Sequences:

>Translated_383_residues
MFVHKTALLSAITMALLASASLQAAEPLKAVGAGEGQLDIVAWPGYIERGESDKAYDWVTGFEKETGCKVNVKTAATSDE
MVSLMAKGGYDLVTASGDASLRLIVGKRVQPINTALIPNWKSLDPRLKDAPWYVVNNQTFGTPYQWGPNVLMYNTNVFKT
APTSWNVVFDAQNLPDGKPNKGRVQAYDGPIYIADAALYLKSTKPELGIKDPYQLTEDQYKAVLELLRAQQKLIHRYWHD
TTVQMSDFKNEGVVASSAWPYQVNGLINEKQPIASTVPKEGATGWADTTMLHAEAKHPNCAYKWMDWSLQPKVQGDVAAW
FGSLPAVPAACQGSELLGAEGCKTNGFDQFDKIAFWKTPQAEGGKFVPYSRWTQDYIAIMGGR
>Mature_383_residues
MFVHKTALLSAITMALLASASLQAAEPLKAVGAGEGQLDIVAWPGYIERGESDKAYDWVTGFEKETGCKVNVKTAATSDE
MVSLMAKGGYDLVTASGDASLRLIVGKRVQPINTALIPNWKSLDPRLKDAPWYVVNNQTFGTPYQWGPNVLMYNTNVFKT
APTSWNVVFDAQNLPDGKPNKGRVQAYDGPIYIADAALYLKSTKPELGIKDPYQLTEDQYKAVLELLRAQQKLIHRYWHD
TTVQMSDFKNEGVVASSAWPYQVNGLINEKQPIASTVPKEGATGWADTTMLHAEAKHPNCAYKWMDWSLQPKVQGDVAAW
FGSLPAVPAACQGSELLGAEGCKTNGFDQFDKIAFWKTPQAEGGKFVPYSRWTQDYIAIMGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=375, Percent_Identity=76.2666666666667, Blast_Score=608, Evalue=1e-175,
Organism=Escherichia coli, GI1787078, Length=304, Percent_Identity=28.2894736842105, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42152; Mature: 42152

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVHKTALLSAITMALLASASLQAAEPLKAVGAGEGQLDIVAWPGYIERGESDKAYDWVT
CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEECCCHHCCCCCCCCCHHHC
GFEKETGCKVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIVGKRVQPINTALIPNW
CCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCC
KSLDPRLKDAPWYVVNNQTFGTPYQWGPNVLMYNTNVFKTAPTSWNVVFDAQNLPDGKPN
CCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCCCCCCC
KGRVQAYDGPIYIADAALYLKSTKPELGIKDPYQLTEDQYKAVLELLRAQQKLIHRYWHD
CCEEEEECCCEEEEEEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCC
TTVQMSDFKNEGVVASSAWPYQVNGLINEKQPIASTVPKEGATGWADTTMLHAEAKHPNC
CEEEECCCCCCCEEECCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCC
AYKWMDWSLQPKVQGDVAAWFGSLPAVPAACQGSELLGAEGCKTNGFDQFDKIAFWKTPQ
EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCEEEEECCC
AEGGKFVPYSRWTQDYIAIMGGR
CCCCEECCCHHCCCCEEEEECCC
>Mature Secondary Structure
MFVHKTALLSAITMALLASASLQAAEPLKAVGAGEGQLDIVAWPGYIERGESDKAYDWVT
CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEECCCHHCCCCCCCCCHHHC
GFEKETGCKVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIVGKRVQPINTALIPNW
CCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCEECCCC
KSLDPRLKDAPWYVVNNQTFGTPYQWGPNVLMYNTNVFKTAPTSWNVVFDAQNLPDGKPN
CCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCCCCCCC
KGRVQAYDGPIYIADAALYLKSTKPELGIKDPYQLTEDQYKAVLELLRAQQKLIHRYWHD
CCEEEEECCCEEEEEEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCC
TTVQMSDFKNEGVVASSAWPYQVNGLINEKQPIASTVPKEGATGWADTTMLHAEAKHPNC
CEEEECCCCCCCEEECCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCC
AYKWMDWSLQPKVQGDVAAWFGSLPAVPAACQGSELLGAEGCKTNGFDQFDKIAFWKTPQ
EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCEEEEECCC
AEGGKFVPYSRWTQDYIAIMGGR
CCCCEECCCHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]