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The map label for this gene is yfdE [H]

Identifier: 77457260

GI number: 77457260

Start: 1197068

End: 1198267

Strand: Reverse

Name: yfdE [H]

Synonym: Pfl01_1033

Alternate gene names: 77457260

Gene position: 1198267-1197068 (Counterclockwise)

Preceding gene: 77457265

Following gene: 77457259

Centisome position: 18.61

GC content: 60.5

Gene sequence:

>1200_bases
ATGCCGTTCGCCAACAAACCGCTCAGCGGTCTGAAAGTCATTGAATTGGGTACTTTGATTGCCGGGCCGTTTGCCTCGCG
CATCTGCGGCGAATTCGGCGCCGAAGTGATCAAGATCGAGTCGCCGGACGGCGGTGATCCGTTGCGCAAGTGGCGCAAGT
TGTACGAAGGCACGTCGCTGTGGTGGTTCGTCCAGGCACGCAACAAAAAGTCCCTGACGCTGAACCTGAAACACCCCGAC
GGCCTGGCGATCCTGAAAAAACTGCTGGGTGAAGCCGATATCCTGATCGAAAACTTCCGCCCCGGCGTGCTGGAAAAACT
CGGTCTGAGCTGGGAAACCCTTCACGCACTCAATCCCAAACTGGTGATGGTGCGCCTGTCCGGTTTCGGCCAGACCGGGC
CGATGAAGGACCAGCCAGGTTTCGGCGCGGTCGGCGAATCCATGGGCGGCCTGCGCTACATCACCGGTTTCGAAGACCGG
CCGCCGGTGCGCACCGGGATTTCCATTGGCGATTCGATTGCGGCTTTGTGGGGCGTGATCGGCGCGTTGATGGCTTTGCG
TCATCGCGAGGTCAACGGCGGTCTCGGTCAGGTGGTCGATGTGGCGTTGTACGAAGCCATCTTCGCCATGATGGAAAGCA
TGGTCCCGGAGTTCGATGTGTTCGGATTCATTCGCGAGCGTACCGGCAACATCATGCCGGGCATCACACCCTCCTCGATC
CACACCAGCGCCGACGGCAAACACGTGCAGATCGGCGCCAACGGTGATGCGATTTTCAAGCGTTTCATGCTGATCATCGG
CCGTGAAGATCTGGCCAATGACGCGGCGCTGGCCAGCAATGACGGGCGCGACACTCGCCGCGACGAGCTATACGGCGTGA
TCGACCGTTGGGTCAATTCGCTGCCGCTGCAAACCGTGCTGGACCTGCTGAACCAGGCGGAGGTGCCCGCCAGCCGGATC
TTCAGCGCCGAAGACATGTTCAACGATCCGCAGTACCTGGCCCGGGAAATGTTCCTGCAGGCCAAACTGCCGGACGGCAA
ACCCTTCAAGATGCCAGGCATCGTGCCGAAACTCTCTGAGACACCCGGCTCGTCCGAATGGGTCGGACCGCAGCTCGGTG
AACACAATGCGCAGGTACTCCACGATCTTGGCTACGACGAGAAGCAGATCGCCCGGCTGCGCGAAGACGGAGCCATCTGA

Upstream 100 bases:

>100_bases
TGTAGGCAATCCACGAATTGATGGCGATCAACCTTGCGCGACTGACAGCCGGCTATGTTAAAACGCTGTATCCGCTCAGC
CTTGTCCTACAGGATCTCGC

Downstream 100 bases:

>100_bases
GCTGAATCGCCTGATGCCCTCGGCCTCGAACCGCGCCCACCATTGGTGGACCTGGCGGTTGTTCGGCCTGCTATTCCTGC
TGGTGCTGCCGACGTGGGCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MPFANKPLSGLKVIELGTLIAGPFASRICGEFGAEVIKIESPDGGDPLRKWRKLYEGTSLWWFVQARNKKSLTLNLKHPD
GLAILKKLLGEADILIENFRPGVLEKLGLSWETLHALNPKLVMVRLSGFGQTGPMKDQPGFGAVGESMGGLRYITGFEDR
PPVRTGISIGDSIAALWGVIGALMALRHREVNGGLGQVVDVALYEAIFAMMESMVPEFDVFGFIRERTGNIMPGITPSSI
HTSADGKHVQIGANGDAIFKRFMLIIGREDLANDAALASNDGRDTRRDELYGVIDRWVNSLPLQTVLDLLNQAEVPASRI
FSAEDMFNDPQYLAREMFLQAKLPDGKPFKMPGIVPKLSETPGSSEWVGPQLGEHNAQVLHDLGYDEKQIARLREDGAI

Sequences:

>Translated_399_residues
MPFANKPLSGLKVIELGTLIAGPFASRICGEFGAEVIKIESPDGGDPLRKWRKLYEGTSLWWFVQARNKKSLTLNLKHPD
GLAILKKLLGEADILIENFRPGVLEKLGLSWETLHALNPKLVMVRLSGFGQTGPMKDQPGFGAVGESMGGLRYITGFEDR
PPVRTGISIGDSIAALWGVIGALMALRHREVNGGLGQVVDVALYEAIFAMMESMVPEFDVFGFIRERTGNIMPGITPSSI
HTSADGKHVQIGANGDAIFKRFMLIIGREDLANDAALASNDGRDTRRDELYGVIDRWVNSLPLQTVLDLLNQAEVPASRI
FSAEDMFNDPQYLAREMFLQAKLPDGKPFKMPGIVPKLSETPGSSEWVGPQLGEHNAQVLHDLGYDEKQIARLREDGAI
>Mature_398_residues
PFANKPLSGLKVIELGTLIAGPFASRICGEFGAEVIKIESPDGGDPLRKWRKLYEGTSLWWFVQARNKKSLTLNLKHPDG
LAILKKLLGEADILIENFRPGVLEKLGLSWETLHALNPKLVMVRLSGFGQTGPMKDQPGFGAVGESMGGLRYITGFEDRP
PVRTGISIGDSIAALWGVIGALMALRHREVNGGLGQVVDVALYEAIFAMMESMVPEFDVFGFIRERTGNIMPGITPSSIH
TSADGKHVQIGANGDAIFKRFMLIIGREDLANDAALASNDGRDTRRDELYGVIDRWVNSLPLQTVLDLLNQAEVPASRIF
SAEDMFNDPQYLAREMFLQAKLPDGKPFKMPGIVPKLSETPGSSEWVGPQLGEHNAQVLHDLGYDEKQIARLREDGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=30.3030303030303, Blast_Score=202, Evalue=6e-52,
Organism=Homo sapiens, GI300863124, Length=422, Percent_Identity=28.436018957346, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=28.2828282828283, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI13376042, Length=422, Percent_Identity=25.5924170616114, Blast_Score=141, Evalue=9e-34,
Organism=Homo sapiens, GI266456254, Length=397, Percent_Identity=25.9445843828715, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI42794625, Length=397, Percent_Identity=25.9445843828715, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI266458393, Length=248, Percent_Identity=31.4516129032258, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=31.4516129032258, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=41.2698412698413, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI42822893, Length=126, Percent_Identity=41.2698412698413, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI87082093, Length=350, Percent_Identity=33.1428571428571, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1788717, Length=424, Percent_Identity=26.8867924528302, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=27.2277227722772, Blast_Score=129, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI115535051, Length=266, Percent_Identity=28.9473684210526, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=301, Percent_Identity=25.2491694352159, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=29.4710327455919, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24585488, Length=253, Percent_Identity=31.6205533596838, Blast_Score=107, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43744; Mature: 43613

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFANKPLSGLKVIELGTLIAGPFASRICGEFGAEVIKIESPDGGDPLRKWRKLYEGTSL
CCCCCCCCCCCEEEEHHHHHHCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCE
WWFVQARNKKSLTLNLKHPDGLAILKKLLGEADILIENFRPGVLEKLGLSWETLHALNPK
EEEEEECCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHCCCHHHHHHCCCE
LVMVRLSGFGQTGPMKDQPGFGAVGESMGGLRYITGFEDRPPVRTGISIGDSIAALWGVI
EEEEEECCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCHHCCCCCHHHHHHHHHH
GALMALRHREVNGGLGQVVDVALYEAIFAMMESMVPEFDVFGFIRERTGNIMPGITPSSI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
HTSADGKHVQIGANGDAIFKRFMLIIGREDLANDAALASNDGRDTRRDELYGVIDRWVNS
CCCCCCCEEEECCCHHHHHHHHHHHHCCHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHC
LPLQTVLDLLNQAEVPASRIFSAEDMFNDPQYLAREMFLQAKLPDGKPFKMPGIVPKLSE
CCHHHHHHHHHHCCCCHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TPGSSEWVGPQLGEHNAQVLHDLGYDEKQIARLREDGAI
CCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
PFANKPLSGLKVIELGTLIAGPFASRICGEFGAEVIKIESPDGGDPLRKWRKLYEGTSL
CCCCCCCCCCEEEEHHHHHHCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCE
WWFVQARNKKSLTLNLKHPDGLAILKKLLGEADILIENFRPGVLEKLGLSWETLHALNPK
EEEEEECCCCEEEEEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHCCCHHHHHHCCCE
LVMVRLSGFGQTGPMKDQPGFGAVGESMGGLRYITGFEDRPPVRTGISIGDSIAALWGVI
EEEEEECCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCHHCCCCCHHHHHHHHHH
GALMALRHREVNGGLGQVVDVALYEAIFAMMESMVPEFDVFGFIRERTGNIMPGITPSSI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
HTSADGKHVQIGANGDAIFKRFMLIIGREDLANDAALASNDGRDTRRDELYGVIDRWVNS
CCCCCCCEEEECCCHHHHHHHHHHHHCCHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHC
LPLQTVLDLLNQAEVPASRIFSAEDMFNDPQYLAREMFLQAKLPDGKPFKMPGIVPKLSE
CCHHHHHHHHHHCCCCHHHHCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TPGSSEWVGPQLGEHNAQVLHDLGYDEKQIARLREDGAI
CCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]