| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77456933
Identifier: 77456933
GI number: 77456933
Start: 833583
End: 834740
Strand: Direct
Name: 77456933
Synonym: Pfl01_0705
Alternate gene names: NA
Gene position: 833583-834740 (Clockwise)
Preceding gene: 77456932
Following gene: 77456934
Centisome position: 12.95
GC content: 60.79
Gene sequence:
>1158_bases ATGAAAAATCTAATGCAATGGAACAGCCTTCCCTCCGAATCCAATGAATGGCTCGAGAAGGTGCGTGCACTGAATCCGCT GATTATTCAGCACCGCGATTACAGCGAGCAGACCAACGCGACGCACAAGGATGTGATGTCCCGATTCTTCAAGGAAGGTT TTGGCCGCACCTCGGTGTCCAAGGCGTTCGGCGGGTCCCAGGTCGATATCCAGACCACCTCGGCCCTGCTGCTGGAATTC GCCCGCTATGACGCCTCGCTGTCCTGGCAGCTGGCGGTGCAAGTGGCGATGGGGCGCCTGTCGGATTACCTGCCGGAAGC CACTTCCGAAGCGATCTATAACCACTGCGACGGTTTCGTGATCGGCGCCATCCACTCCGGCGGCGAAGCGCTGCCGATGG GCGACGAGTACCTGCTGAGCGGCAAATGGGCGTTCGCCAGCGGCTCGGCCCACGCCGACTGGCTGGTCTGCACCGCCACC GTCAAAGGCACCGAAAACAACACCACCCCTGAAGTGCGGATGTTTTTCGTCCCCGCCAGCCAATGCACCATCCTGCCGAC CTGGGACACCCTGGGCATGCGCGGCACCGGCAGCCATCACTTCCAGTGCTCCAACGTGATCGTCCACAAGTCTTTCTCGC TGGATGTCGAAACCCTCAAGCAATCCCCCGAAGCGCGCAGTTCCCGGGCCTATGCCACCGGTTACTACGAGTTCGGCACC CTGGCGGCGATGTCCACCGTGCTCGGCGTGGCCCGGGCTGCGGTCGATCACTTCCGCAATGACCGCGCCGTGAACACCGA CCCGGGCCTGGAAGGGGTGATCTTCGAGAAGACCGGTCGCGCCATCTCTTCGGTGCACACCGCGCAATTGCTGCTGGAAG ATGCGATCCACCAGGTCATCAACCGCGGTGAAACCGTCGGCGAACCGGTCAGCGCCCGCGTCGGCCTGGCCGCCTCGGTG CTGACCGAAAACTCGGTCAATGCGGTCAACCAGATCTACTCGATGGCCGGTTCCAAAGCTGTCTACAAGTCGCACTTCCT GGAGCGTTGCTTCCGCGATATTCACACCGGTTCGAAGCACTTCACGTTGTCGCCTTTGAACTTGCATGGTATCGGCAAGT ATTACCTGGATAAAACCAACGTACTGGCCGCGGCGTAA
Upstream 100 bases:
>100_bases ACGACTGTAGACGTACATTTTTATCGGGGTTTGACAACAATAAAAGTTCTGTCTGTTTTTTCGTCTGCTGATCGTAAATA AATAATAGCTAGGAGCCGTT
Downstream 100 bases:
>100_bases CAGCGGATAAATAAAGCGGGCGCGTTTACAAGTGAAAGTTCACAGGGATCGATAACGCGCCCGCCTTAAGTTGCAACTTT ATTTTCTTAAAACTCAAACT
Product: putative oxidoreductase, MmfH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MKNLMQWNSLPSESNEWLEKVRALNPLIIQHRDYSEQTNATHKDVMSRFFKEGFGRTSVSKAFGGSQVDIQTTSALLLEF ARYDASLSWQLAVQVAMGRLSDYLPEATSEAIYNHCDGFVIGAIHSGGEALPMGDEYLLSGKWAFASGSAHADWLVCTAT VKGTENNTTPEVRMFFVPASQCTILPTWDTLGMRGTGSHHFQCSNVIVHKSFSLDVETLKQSPEARSSRAYATGYYEFGT LAAMSTVLGVARAAVDHFRNDRAVNTDPGLEGVIFEKTGRAISSVHTAQLLLEDAIHQVINRGETVGEPVSARVGLAASV LTENSVNAVNQIYSMAGSKAVYKSHFLERCFRDIHTGSKHFTLSPLNLHGIGKYYLDKTNVLAAA
Sequences:
>Translated_385_residues MKNLMQWNSLPSESNEWLEKVRALNPLIIQHRDYSEQTNATHKDVMSRFFKEGFGRTSVSKAFGGSQVDIQTTSALLLEF ARYDASLSWQLAVQVAMGRLSDYLPEATSEAIYNHCDGFVIGAIHSGGEALPMGDEYLLSGKWAFASGSAHADWLVCTAT VKGTENNTTPEVRMFFVPASQCTILPTWDTLGMRGTGSHHFQCSNVIVHKSFSLDVETLKQSPEARSSRAYATGYYEFGT LAAMSTVLGVARAAVDHFRNDRAVNTDPGLEGVIFEKTGRAISSVHTAQLLLEDAIHQVINRGETVGEPVSARVGLAASV LTENSVNAVNQIYSMAGSKAVYKSHFLERCFRDIHTGSKHFTLSPLNLHGIGKYYLDKTNVLAAA >Mature_385_residues MKNLMQWNSLPSESNEWLEKVRALNPLIIQHRDYSEQTNATHKDVMSRFFKEGFGRTSVSKAFGGSQVDIQTTSALLLEF ARYDASLSWQLAVQVAMGRLSDYLPEATSEAIYNHCDGFVIGAIHSGGEALPMGDEYLLSGKWAFASGSAHADWLVCTAT VKGTENNTTPEVRMFFVPASQCTILPTWDTLGMRGTGSHHFQCSNVIVHKSFSLDVETLKQSPEARSSRAYATGYYEFGT LAAMSTVLGVARAAVDHFRNDRAVNTDPGLEGVIFEKTGRAISSVHTAQLLLEDAIHQVINRGETVGEPVSARVGLAASV LTENSVNAVNQIYSMAGSKAVYKSHFLERCFRDIHTGSKHFTLSPLNLHGIGKYYLDKTNVLAAA
Specific function: Gives rise to a blue or pink color to bacterial colonies. May have an hydroxylase activity, resulting in the observed pigment production [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013107 - InterPro: IPR006092 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02771 Acyl-CoA_dh_N [H]
EC number: NA
Molecular weight: Translated: 42150; Mature: 42150
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLMQWNSLPSESNEWLEKVRALNPLIIQHRDYSEQTNATHKDVMSRFFKEGFGRTSVS CCCCHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHCCCHHHHHHHHHHHHCCCCCHHH KAFGGSQVDIQTTSALLLEFARYDASLSWQLAVQVAMGRLSDYLPEATSEAIYNHCDGFV HHCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEE IGAIHSGGEALPMGDEYLLSGKWAFASGSAHADWLVCTATVKGTENNTTPEVRMFFVPAS EEEEECCCCCCCCCCCEEEECCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECC QCTILPTWDTLGMRGTGSHHFQCSNVIVHKSFSLDVETLKQSPEARSSRAYATGYYEFGT CEEEEECHHCCCCCCCCCCCEEECCEEEEECCCCCHHHHHCCCCHHCCCEEEECCHHHHH LAAMSTVLGVARAAVDHFRNDRAVNTDPGLEGVIFEKTGRAISSVHTAQLLLEDAIHQVI HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH NRGETVGEPVSARVGLAASVLTENSVNAVNQIYSMAGSKAVYKSHFLERCFRDIHTGSKH HCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE FTLSPLNLHGIGKYYLDKTNVLAAA EEECCCCCCCCCHHHCCCCCEEECC >Mature Secondary Structure MKNLMQWNSLPSESNEWLEKVRALNPLIIQHRDYSEQTNATHKDVMSRFFKEGFGRTSVS CCCCHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHCCCHHHHHHHHHHHHCCCCCHHH KAFGGSQVDIQTTSALLLEFARYDASLSWQLAVQVAMGRLSDYLPEATSEAIYNHCDGFV HHCCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEE IGAIHSGGEALPMGDEYLLSGKWAFASGSAHADWLVCTATVKGTENNTTPEVRMFFVPAS EEEEECCCCCCCCCCCEEEECCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECC QCTILPTWDTLGMRGTGSHHFQCSNVIVHKSFSLDVETLKQSPEARSSRAYATGYYEFGT CEEEEECHHCCCCCCCCCCCEEECCEEEEECCCCCHHHHHCCCCHHCCCEEEECCHHHHH LAAMSTVLGVARAAVDHFRNDRAVNTDPGLEGVIFEKTGRAISSVHTAQLLLEDAIHQVI HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH NRGETVGEPVSARVGLAASVLTENSVNAVNQIYSMAGSKAVYKSHFLERCFRDIHTGSKH HCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE FTLSPLNLHGIGKYYLDKTNVLAAA EEECCCCCCCCCHHHCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2230720 [H]