| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yccK [H]
Identifier: 77456714
GI number: 77456714
Start: 563459
End: 564271
Strand: Reverse
Name: yccK [H]
Synonym: Pfl01_0486
Alternate gene names: 77456714
Gene position: 564271-563459 (Counterclockwise)
Preceding gene: 77456715
Following gene: 77456713
Centisome position: 8.76
GC content: 62.73
Gene sequence:
>813_bases ATGAGCCTGCCGACCCTGCACGATCTGCATCGCCCACTGGGCAGCACCGGCCTGCTGGTTTCGCCGCTGGGCCTGGGCAC CGTCAAACTCGGCCGCGACCAGGGCGTGAAATACCCCAACGGCTTCCAGATCCCCGACGATGACGCTGCGCGCATGTTGC TCAAACAGGCGCGGGAGCTGGGCATCAACCTGATCGACACCGCCCCGGCCTATGGCCGCAGCGAAGAACGCCTCGGCCCA CTGCTGCGTGGCCAGCGTCAGGACTGGGTGATCGTCAGCAAGGTCGGCGAAGAATTCGTCGACGGCCAGTCGACCCACGA TTTCAGCGCCGCTCACACCCGGATGTCGGTGGAGCGCAGTCTGCAACGTCTTGAAACCGATTTTATCGACCTGGTGCTGG TGCACTCCGATGGCAACGATCTGGCGATCCTCAACGACAGCGAAGTCTACGCAACCCTCGCGGCGCTGAAGGCCGAGGGC AAGATTCGCGGCTTCGGTTTTTCCGGCAAAACCGTCGACGGTGGCCTCAAAGCACTGGAGCAAGGCGACTGCGCGATGGT CACCTACAATCTGAACGAACAAAACGAGAAGGCGGTCATTGACTATGCTGCTGCCCACGGCAAAGCCATTCTGGTGAAGA AGGCGCTGGCCAGTGGTCATGTGTGCCTGAGTCCCGGTGTGGATCCGGTGCGCGCCAGCTTCGAGTTGCTGTTCGCCCAG CCCGGCGTGGCCAGTGCCATCGTCGGGACGATCAATCCGCTGCACCTCGCCCACAACGTTGCGACCGTTGCCCAGGTCCT TCGTGGTCACTGA
Upstream 100 bases:
>100_bases CCTCCCTGGAACGCGACGGTATCCAGCCGAGCCATCCTGGTCCGCTGCCCGAGCTGCCAAAACCACCGATGGGCGTTCCC GCCTGGGAGCAATTGCTGCC
Downstream 100 bases:
>100_bases CGCCGCCTCGCGGCCTTAAGCAGGAGCCGACATGCCGCGTACGCTCATCAGAAAGAACCCGAGCAACTTCAAGACGCTGC CGCTGTTCGTCGAAGCCACG
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MSLPTLHDLHRPLGSTGLLVSPLGLGTVKLGRDQGVKYPNGFQIPDDDAARMLLKQARELGINLIDTAPAYGRSEERLGP LLRGQRQDWVIVSKVGEEFVDGQSTHDFSAAHTRMSVERSLQRLETDFIDLVLVHSDGNDLAILNDSEVYATLAALKAEG KIRGFGFSGKTVDGGLKALEQGDCAMVTYNLNEQNEKAVIDYAAAHGKAILVKKALASGHVCLSPGVDPVRASFELLFAQ PGVASAIVGTINPLHLAHNVATVAQVLRGH
Sequences:
>Translated_270_residues MSLPTLHDLHRPLGSTGLLVSPLGLGTVKLGRDQGVKYPNGFQIPDDDAARMLLKQARELGINLIDTAPAYGRSEERLGP LLRGQRQDWVIVSKVGEEFVDGQSTHDFSAAHTRMSVERSLQRLETDFIDLVLVHSDGNDLAILNDSEVYATLAALKAEG KIRGFGFSGKTVDGGLKALEQGDCAMVTYNLNEQNEKAVIDYAAAHGKAILVKKALASGHVCLSPGVDPVRASFELLFAQ PGVASAIVGTINPLHLAHNVATVAQVLRGH >Mature_269_residues SLPTLHDLHRPLGSTGLLVSPLGLGTVKLGRDQGVKYPNGFQIPDDDAARMLLKQARELGINLIDTAPAYGRSEERLGPL LRGQRQDWVIVSKVGEEFVDGQSTHDFSAAHTRMSVERSLQRLETDFIDLVLVHSDGNDLAILNDSEVYATLAALKAEGK IRGFGFSGKTVDGGLKALEQGDCAMVTYNLNEQNEKAVIDYAAAHGKAILVKKALASGHVCLSPGVDPVRASFELLFAQP GVASAIVGTINPLHLAHNVATVAQVLRGH
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Escherichia coli, GI87081735, Length=236, Percent_Identity=30.5084745762712, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1788070, Length=189, Percent_Identity=32.2751322751323, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI212645785, Length=227, Percent_Identity=29.0748898678414, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323684, Length=159, Percent_Identity=36.4779874213836, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI24646155, Length=165, Percent_Identity=38.1818181818182, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24646159, Length=177, Percent_Identity=34.4632768361582, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28902; Mature: 28771
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPTLHDLHRPLGSTGLLVSPLGLGTVKLGRDQGVKYPNGFQIPDDDAARMLLKQAREL CCCCCHHHHHCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GINLIDTAPAYGRSEERLGPLLRGQRQDWVIVSKVGEEFVDGQSTHDFSAAHTRMSVERS CCEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHH LQRLETDFIDLVLVHSDGNDLAILNDSEVYATLAALKAEGKIRGFGFSGKTVDGGLKALE HHHHHHCEEEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHC QGDCAMVTYNLNEQNEKAVIDYAAAHGKAILVKKALASGHVCLSPGVDPVRASFELLFAQ CCCEEEEEEECCCCCCEEEEEEHHCCCCEEEEEHHHHCCCEEECCCCCHHHHCEEEEEEC PGVASAIVGTINPLHLAHNVATVAQVLRGH CCHHHHHHHCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLPTLHDLHRPLGSTGLLVSPLGLGTVKLGRDQGVKYPNGFQIPDDDAARMLLKQAREL CCCCHHHHHCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GINLIDTAPAYGRSEERLGPLLRGQRQDWVIVSKVGEEFVDGQSTHDFSAAHTRMSVERS CCEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHH LQRLETDFIDLVLVHSDGNDLAILNDSEVYATLAALKAEGKIRGFGFSGKTVDGGLKALE HHHHHHCEEEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHC QGDCAMVTYNLNEQNEKAVIDYAAAHGKAILVKKALASGHVCLSPGVDPVRASFELLFAQ CCCEEEEEEECCCCCCEEEEEEHHCCCCEEEEEHHHHCCCEEECCCCCHHHHCEEEEEEC PGVASAIVGTINPLHLAHNVATVAQVLRGH CCHHHHHHHCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9106203 [H]