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The map label for this gene is ybbS [C]

Identifier: 77456527

GI number: 77456527

Start: 348235

End: 349161

Strand: Reverse

Name: ybbS [C]

Synonym: Pfl01_0299

Alternate gene names: 77456527

Gene position: 349161-348235 (Counterclockwise)

Preceding gene: 77456531

Following gene: 77456521

Centisome position: 5.42

GC content: 58.79

Gene sequence:

>927_bases
ATGGATAGCAGAACCTTACGCAACCTCATGCGCATCGTGCAGACCGGCTCGTTGTCGGCCGCAGCCGAGCATTCGTGCCT
GACTGTGCAGGCCTTGGCCGCACAGCTGAACAAGGTCGAAGAGCAGTTCGGTTTCCGCTTGTTTAGACGATCCAACAAGG
GGCTGACGCTGACGCCGCAAGGCACCGAGCTGACGCCTTATATGGACAGAGTGCTGATTGCCACGCGGCAGATGGAAGAG
AAAGTCGAAGCCTTGAAGGTGCCGGGACAGCGCACGTTGAAAGTGGCGTTGAACACCACGCTGGCGCCGGACTTCAACCG
GCGATTGATCGGACGCCTGATCGAGGTGTTTCCCGATTACCAGATGGAATTCAGCTACGCCGAGTCGATGGAAAACCTCA
GCAAGCTGAAGAACGAGGACTTCGACCTTGCGGTGCTGATCGGTCCGCAGCGTCCGGGTCTGCCGAGCATTGTCCTGCCG
GAAGTGCAGGTGCAGGTGGTCGGCGCGCACTGTGGTCAGGAGAACGATCCGCTGACCTTGCTTGGCAACAAGTTTCAGGT
GCGTCCCGCAGAAGACTGTCCGTATTCCCACAGCTTTTTGCGTTTTCTCGACGCCGGGCTGGGTAATCACGAGAACAGCC
AGCGGACGATCTACTCCTGCAGCGAAACGCTGACCCTGTCGCTCATCACGCAGATGGACGCCGTCGGCATGGTCTCCCGC
GAGGCGGCGCAGAAAAATGGCCTGACGATTTTCCCCGGGTTCGAGGATTTCCTCGAAGTGCGCCTGGCGGTGAACAACCC
GGATCTGTCCGGTCAGGCGTTGAACGACGTGGTCGATCTGCCGCTACATGAGCGAGCCGAGCGCAATGTACGCAGCCGTC
CCAACCGCCACACTGAGAAAGAGGTTTTTGCTGAAATACGCACATAA

Upstream 100 bases:

>100_bases
GCGACAACTATGCTCAGGTACAGGAATATAGCCGGCAAATGGCGCCGTTCCGGCTGTCACGTACACAACAATACCCAGCC
CACTTCAGAGGGCATTACCC

Downstream 100 bases:

>100_bases
CAGCGTCGGAATCGCGGCATAAAATTCCGGGCGATCGAGCTGTATGTGCTGATCCTTGATCAACAAGGGTGTCAGGCTGA
TCGCAGCGACGATCGCCACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: LysR Family Transcription Regulator Protein; Transcriptional Regulator; LysR Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator LysR-Family

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDSRTLRNLMRIVQTGSLSAAAEHSCLTVQALAAQLNKVEEQFGFRLFRRSNKGLTLTPQGTELTPYMDRVLIATRQMEE
KVEALKVPGQRTLKVALNTTLAPDFNRRLIGRLIEVFPDYQMEFSYAESMENLSKLKNEDFDLAVLIGPQRPGLPSIVLP
EVQVQVVGAHCGQENDPLTLLGNKFQVRPAEDCPYSHSFLRFLDAGLGNHENSQRTIYSCSETLTLSLITQMDAVGMVSR
EAAQKNGLTIFPGFEDFLEVRLAVNNPDLSGQALNDVVDLPLHERAERNVRSRPNRHTEKEVFAEIRT

Sequences:

>Translated_308_residues
MDSRTLRNLMRIVQTGSLSAAAEHSCLTVQALAAQLNKVEEQFGFRLFRRSNKGLTLTPQGTELTPYMDRVLIATRQMEE
KVEALKVPGQRTLKVALNTTLAPDFNRRLIGRLIEVFPDYQMEFSYAESMENLSKLKNEDFDLAVLIGPQRPGLPSIVLP
EVQVQVVGAHCGQENDPLTLLGNKFQVRPAEDCPYSHSFLRFLDAGLGNHENSQRTIYSCSETLTLSLITQMDAVGMVSR
EAAQKNGLTIFPGFEDFLEVRLAVNNPDLSGQALNDVVDLPLHERAERNVRSRPNRHTEKEVFAEIRT
>Mature_308_residues
MDSRTLRNLMRIVQTGSLSAAAEHSCLTVQALAAQLNKVEEQFGFRLFRRSNKGLTLTPQGTELTPYMDRVLIATRQMEE
KVEALKVPGQRTLKVALNTTLAPDFNRRLIGRLIEVFPDYQMEFSYAESMENLSKLKNEDFDLAVLIGPQRPGLPSIVLP
EVQVQVVGAHCGQENDPLTLLGNKFQVRPAEDCPYSHSFLRFLDAGLGNHENSQRTIYSCSETLTLSLITQMDAVGMVSR
EAAQKNGLTIFPGFEDFLEVRLAVNNPDLSGQALNDVVDLPLHERAERNVRSRPNRHTEKEVFAEIRT

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34568; Mature: 34568

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRTLRNLMRIVQTGSLSAAAEHSCLTVQALAAQLNKVEEQFGFRLFRRSNKGLTLTPQ
CCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GTELTPYMDRVLIATRQMEEKVEALKVPGQRTLKVALNTTLAPDFNRRLIGRLIEVFPDY
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC
QMEFSYAESMENLSKLKNEDFDLAVLIGPQRPGLPSIVLPEVQVQVVGAHCGQENDPLTL
CEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEECCCEEEEEEEHHCCCCCCCEEE
LGNKFQVRPAEDCPYSHSFLRFLDAGLGNHENSQRTIYSCSETLTLSLITQMDAVGMVSR
ECCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
EAAQKNGLTIFPGFEDFLEVRLAVNNPDLSGQALNDVVDLPLHERAERNVRSRPNRHTEK
HHHHHCCCEEECCHHHHHHEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHH
EVFAEIRT
HHHHHCCC
>Mature Secondary Structure
MDSRTLRNLMRIVQTGSLSAAAEHSCLTVQALAAQLNKVEEQFGFRLFRRSNKGLTLTPQ
CCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GTELTPYMDRVLIATRQMEEKVEALKVPGQRTLKVALNTTLAPDFNRRLIGRLIEVFPDY
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC
QMEFSYAESMENLSKLKNEDFDLAVLIGPQRPGLPSIVLPEVQVQVVGAHCGQENDPLTL
CEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEECCCEEEEEEEHHCCCCCCCEEE
LGNKFQVRPAEDCPYSHSFLRFLDAGLGNHENSQRTIYSCSETLTLSLITQMDAVGMVSR
ECCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
EAAQKNGLTIFPGFEDFLEVRLAVNNPDLSGQALNDVVDLPLHERAERNVRSRPNRHTEK
HHHHHCCCEEECCHHHHHHEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHH
EVFAEIRT
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA