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The map label for this gene is yhgF [H]

Identifier: 77456487

GI number: 77456487

Start: 304890

End: 307214

Strand: Reverse

Name: yhgF [H]

Synonym: Pfl01_0259

Alternate gene names: 77456487

Gene position: 307214-304890 (Counterclockwise)

Preceding gene: 77456490

Following gene: 77456486

Centisome position: 4.77

GC content: 63.01

Gene sequence:

>2325_bases
ATGGACAGCATCAACAGCCGCATCGCCGAGGAACTCGGCGTACGCCCACAACAGGTCGAAGCGGCCGTCGCGCTACTCGA
TGAAGGCTCTACCGTTCCCTTCATCGCCCGTTACCGGAAAGAAGTGACCGGCAGCCTCGATGACACCCAACTGCGTCATC
TGGAAGAGCGTCTGCGCTACCTGCGAGAACTCGACGAACGGCGCATCAGCATTCTTTCCAGCATTCAGGAGCAGGGCAAA
CTCACCCCTGAGCTGGAGCGCGAAATCAAACTCGCCGACACCAAGACCCGCCTCGAAGACTTGTACCTGCCGTACAAGCA
GAAGCGCCGCACCAAGGGCCAGATCGCCCTGGAAGCCGGCCTCGGCGAACTGGCCGACGGTCTGTTCAACGACCCGTCGC
TGGCCCCGGAAGCCGAAGCCGCGCGCTTCATCGACGCTGAAAAAGGCGTGGCCGACGTCAAGGCAGCGCTGGAAGGCGCC
AAGTACATCCTCATGGAGCGCTTCGCCGAAGACGCCAACCTGCTGGAAAAACTGCGCACCTACCTGAAACAGGAAGCCAC
CCTCAGTGCCCGCGTGATCGCCGGCAAGGAAGAGGAAGGCGCCAAGTTCCGTGACTACTTCGAACACGACGAACCGCTGA
AAAGCATGCCGTCGCACCGCGCGCTGGCGATTTTCCGTGGCCGCAACGAAGGCATTCTCAGCTCCGCGCTGAAAGTCGGC
GAAGAGCTGCCGGGCACCCTGCACCCGTGCGAAGGCATGATCGGCCAGCACGTCGGCATCCAGAACCAGAACCGTCCGGC
CGACAAGTGGCTGAGTGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTCTACACCCACCTGGAAACCGACTTGCTCGGCG
AGCTGCGCGACGGCGCCGAAACCGAAGCGATCAACGTGTTCGCCCACAACCTGCACGACCTGCTGCTGGCCGCCCCGGCC
GGCCCGCGCGCGACTCTGGGCCTCGACCCGGGCCTGCGCACCGGCTGCAAGGTTGCGGTGGTCGACTCCACCGGCAAGCT
GCTGGATCACGCCACGGTTTACCCGCACGTGCCGCACAACAAATGGGATCAGACCATCGCCATCCTGGCCGCCCTGTGCG
CCAAGCACTCGGTCGACCTGATCGCCATCGGCAACGGCACCGCCAGCCGTGAGACCGACAAGCTGGCGATCGAACTGATC
AAAAAATACCCAGCGATGAAAATGACCAAAGTCATGGTCTCCGAAGCCGGCGCATCGGTGTATTCGGCATCGGAACTGGC
AGCCAAGGAATTCCCGGATCTGGACGTGTCGATCCGTGGCGCGGTATCGATCGCCCGTCGTCTGCAGGATCCGCTGGCCG
AACTGGTGAAAATCGATCCGAAATCCATCGGTGTCGGCCAGTACCAGCACGACGTGTCGCAGCTGAAACTGGCGCGCGGT
CTGGACGCCGTGGTCGAGGACTGCGTGAACGCCGTGGGCGTGGACGTGAACACTGCCTCCGTGGCGCTGCTGGCGCGGAT
CTCCGGCCTCAACGCGACCCTGGCGCAGAACATCGTGGCCCACCGTGACGAGCACGGCGCGTTCAAGACTCGCGCGGCGC
TGAAGAAAGTCGCGCGTCTGGGCGAGAAAACCTTCGAACAGGCCGCCGGCTTCCTGCGTGTGATGAACGGCGACAACCCA
CTGGATTCCTCGGCCGTTCACCCGGAAGCCTATCCGCTGGTGCAACGCATCGCCGCTGAAACCGACCGCGACATTCGCTC
GCTGATCGGCGACGCCGCGTTCCTCAAGCGTCTGGATCCGAAGAAATTCACCGACGAGACCTTCGGTCTGCCAACCGTTA
CCGACATCCTGCAAGAGCTGGAAAAACCGGGCCGAGACCCGCGTCCGGAGTTCAAGACCGCCGAGTTCCAGGAAGGCGTC
GAGGACCTGAAGGACCTGCAACTGGGGATGATCCTCGAAGGCGTGGTGACCAACGTGACCGCGTTCGGTGCATTCGTCGA
CATCGGCGTGCATCAGGACGGTCTGGTGCACATTTCGGCGCTGTCGGAGAAATTCATCAAGGATCCGCGCGAAGCGGTGA
AGGCCGGCGACGTGGTGAAAGTGAAAGTCATGGAAGTCGACATCCCGCGCAAACGCGTCGGCCTGTCGATGCGCATGAGC
GACACCCCGGGCGAGAAGATCGACGGTGCCCGTGGCTCGCGTCCGGGCTCGGCACCACGCCAGTCGCAAGGTTCGGCGCC
ACGCAAGGAAAGCACCCCGGCGGCTCCAGCCAATAACGCGATGGCGTCGTTGTTTGCCAACGCCAAGCAGTTGAAGAAAC
GCTGA

Upstream 100 bases:

>100_bases
TTTTGACCCAGGCAGCGGCCAGCATCAAGCCGCCCCACCAGACTCCGGGCCTTCATTTACGCGCCTGCGAGCCTGCTTTC
ACAATTTGTCAGGTGGTTTT

Downstream 100 bases:

>100_bases
TGGATATGCCGGCCGGGCTCGTCGAGAGCGCGTTTTTCAAGCTGTTGGGCTGCCGCCTGCACAGCCTGGAAACCGGGGTG
GCGCAAGTCGCCCTGGTGCT

Product: RNA binding S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 774; Mature: 774

Protein sequence:

>774_residues
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDERRISILSSIQEQGK
LTPELEREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPSLAPEAEAARFIDAEKGVADVKAALEGA
KYILMERFAEDANLLEKLRTYLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG
EELPGTLHPCEGMIGQHVGIQNQNRPADKWLSEVVRWTWKVKLYTHLETDLLGELRDGAETEAINVFAHNLHDLLLAAPA
GPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHNKWDQTIAILAALCAKHSVDLIAIGNGTASRETDKLAIELI
KKYPAMKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVAHRDEHGAFKTRAALKKVARLGEKTFEQAAGFLRVMNGDNP
LDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGV
EDLKDLQLGMILEGVVTNVTAFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
DTPGEKIDGARGSRPGSAPRQSQGSAPRKESTPAAPANNAMASLFANAKQLKKR

Sequences:

>Translated_774_residues
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDERRISILSSIQEQGK
LTPELEREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPSLAPEAEAARFIDAEKGVADVKAALEGA
KYILMERFAEDANLLEKLRTYLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG
EELPGTLHPCEGMIGQHVGIQNQNRPADKWLSEVVRWTWKVKLYTHLETDLLGELRDGAETEAINVFAHNLHDLLLAAPA
GPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHNKWDQTIAILAALCAKHSVDLIAIGNGTASRETDKLAIELI
KKYPAMKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVAHRDEHGAFKTRAALKKVARLGEKTFEQAAGFLRVMNGDNP
LDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGV
EDLKDLQLGMILEGVVTNVTAFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
DTPGEKIDGARGSRPGSAPRQSQGSAPRKESTPAAPANNAMASLFANAKQLKKR
>Mature_774_residues
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDERRISILSSIQEQGK
LTPELEREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADGLFNDPSLAPEAEAARFIDAEKGVADVKAALEGA
KYILMERFAEDANLLEKLRTYLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG
EELPGTLHPCEGMIGQHVGIQNQNRPADKWLSEVVRWTWKVKLYTHLETDLLGELRDGAETEAINVFAHNLHDLLLAAPA
GPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHNKWDQTIAILAALCAKHSVDLIAIGNGTASRETDKLAIELI
KKYPAMKMTKVMVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVAHRDEHGAFKTRAALKKVARLGEKTFEQAAGFLRVMNGDNP
LDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDPKKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGV
EDLKDLQLGMILEGVVTNVTAFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
DTPGEKIDGARGSRPGSAPRQSQGSAPRKESTPAAPANNAMASLFANAKQLKKR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=794, Percent_Identity=32.6196473551637, Blast_Score=371, Evalue=1e-102,
Organism=Homo sapiens, GI27597090, Length=711, Percent_Identity=22.7848101265823, Blast_Score=94, Evalue=4e-19,
Organism=Escherichia coli, GI87082262, Length=775, Percent_Identity=64, Blast_Score=981, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=46.0526315789474, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=727, Percent_Identity=28.3356258596974, Blast_Score=226, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17552892, Length=257, Percent_Identity=26.4591439688716, Blast_Score=66, Evalue=8e-11,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=32.4675324675325, Blast_Score=370, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84733; Mature: 84733

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELDERRISILSSIQEQGKLTPELEREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECC
LGELADGLFNDPSLAPEAEAARFIDAEKGVADVKAALEGAKYILMERFAEDANLLEKLRT
CHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG
HHHHHHHHHHHEEECCCCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHH
EELPGTLHPCEGMIGQHVGIQNQNRPADKWLSEVVRWTWKVKLYTHLETDLLGELRDGAE
HHCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCCC
TEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCC
KWDQTIAILAALCAKHSVDLIAIGNGTASRETDKLAIELIKKYPAMKMTKVMVSEAGASV
CHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
YSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVAHRDEHGAFKTRAALKKVARL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
GEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDP
HHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
HHHHHHEECCCCCCCEEHHHHHHHHHCCHHHHHCCCCEEEEEEEEECCCHHHHCCEEEEC
DTPGEKIDGARGSRPGSAPRQSQGSAPRKESTPAAPANNAMASLFANAKQLKKR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY
CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELDERRISILSSIQEQGKLTPELEREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECC
LGELADGLFNDPSLAPEAEAARFIDAEKGVADVKAALEGAKYILMERFAEDANLLEKLRT
CHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG
HHHHHHHHHHHEEECCCCCCCHHHHHHCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHH
EELPGTLHPCEGMIGQHVGIQNQNRPADKWLSEVVRWTWKVKLYTHLETDLLGELRDGAE
HHCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCCC
TEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCC
KWDQTIAILAALCAKHSVDLIAIGNGTASRETDKLAIELIKKYPAMKMTKVMVSEAGASV
CHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
YSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVAHRDEHGAFKTRAALKKVARL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
GEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDP
HHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS
HHHHHHEECCCCCCCEEHHHHHHHHHCCHHHHHCCCCEEEEEEEEECCCHHHHCCEEEEC
DTPGEKIDGARGSRPGSAPRQSQGSAPRKESTPAAPANNAMASLFANAKQLKKR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]