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The map label for this gene is sdsB [H]

Identifier: 77456440

GI number: 77456440

Start: 252251

End: 253186

Strand: Reverse

Name: sdsB [H]

Synonym: Pfl01_0212

Alternate gene names: 77456440

Gene position: 253186-252251 (Counterclockwise)

Preceding gene: 77456442

Following gene: 77456438

Centisome position: 3.93

GC content: 62.07

Gene sequence:

>936_bases
ATGCCGGAAAAGCATATGGATCTTCGCCAGTTGCGCTACTTCATCGCCCTCAACGAACACCGCAGTTTTGTCCGCGCGGC
CGACGCCATGGGCATCACTCAACCGGCGTTCAGCCGCAGTATTCAGGGGCTGGAGCAGGAGTTCGGCTGCGTGCTGGTGG
ATCGCGGCAACAAGGATCTGCGCCCGACACCCGAAGGCCAGGTGGTGCTTCAGCACGCCCTGACCCTGGTGCAGGGCGCG
GCATTACTCAGCGCCGAAGTGACGCAGATGACCAAGCTCGATGCCGGCGAACTGCACTTCGGTTGCGGTCCGGCACCAGC
GGTGAAACTGGTGCCGGACGCGGTGGCGCAATTCATCAATGCGCACCCGAAAGTACGCACCTGCTTTCAGGTGGATAACT
GGGAAAAACTCAGCCGCGCCCTGAGCCGCGAGGAGATCGAATTCTTCATCGCCGACATCCGCCATTTCGAATCCGACCCG
AACTTCCAGACCCAGCCGCTGACACCCAAGCGCGGGGTGTTTTTCTGCCGGCCGGGGCATCCGCTGCTGGCCAAGGAAAG
CCTGTCGACCAACGACATGTTCGACTACCCGCTGGCGACCACGTTGATCCCGCCGGGCATTCGCAAACTGCTGGCGAATC
TCAGCGGCCGGATCGATTTTTCACCGACCATCGAGACCGAGCATTTTCCGGCGCTGGTGAAAGTGGTGCTGCAATCCAAC
GCGATTGGCGTCGGCACTGAAGAGGCGTTTGTCGAGGACATCGCCCAAGGCTCGCTGGCGCTGCTGCACTGGCGCAATCT
GCCGCAGAACCTAGAGAGCATGAATGCGCGGTGCGGGATTGTGAGCCGCACGGGGTTCCGGCTGTCACCGGCGGCGCGGG
CGATGATCGAGACGTTGGTGGCGGTGGATAAGCAGGCGATCAGCGTCGCGGTATGA

Upstream 100 bases:

>100_bases
TTACATCTAATAGATATTGACATGCTTCTTTGACGGAATAAGAGCTTGCATTTAAAACCTCAAGCAACCTCGTCGCAAAT
GCCTTCGAGCTATTTTTAGG

Downstream 100 bases:

>100_bases
GGGTCATTCCCACGCCTTGCGCGGGAATGACCGCATGACTCAGAGCTTCGCAGCTGCCAGCTCAGGCGCCACCCACTCGT
TGACCTTGAACGGCTTGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MPEKHMDLRQLRYFIALNEHRSFVRAADAMGITQPAFSRSIQGLEQEFGCVLVDRGNKDLRPTPEGQVVLQHALTLVQGA
ALLSAEVTQMTKLDAGELHFGCGPAPAVKLVPDAVAQFINAHPKVRTCFQVDNWEKLSRALSREEIEFFIADIRHFESDP
NFQTQPLTPKRGVFFCRPGHPLLAKESLSTNDMFDYPLATTLIPPGIRKLLANLSGRIDFSPTIETEHFPALVKVVLQSN
AIGVGTEEAFVEDIAQGSLALLHWRNLPQNLESMNARCGIVSRTGFRLSPAARAMIETLVAVDKQAISVAV

Sequences:

>Translated_311_residues
MPEKHMDLRQLRYFIALNEHRSFVRAADAMGITQPAFSRSIQGLEQEFGCVLVDRGNKDLRPTPEGQVVLQHALTLVQGA
ALLSAEVTQMTKLDAGELHFGCGPAPAVKLVPDAVAQFINAHPKVRTCFQVDNWEKLSRALSREEIEFFIADIRHFESDP
NFQTQPLTPKRGVFFCRPGHPLLAKESLSTNDMFDYPLATTLIPPGIRKLLANLSGRIDFSPTIETEHFPALVKVVLQSN
AIGVGTEEAFVEDIAQGSLALLHWRNLPQNLESMNARCGIVSRTGFRLSPAARAMIETLVAVDKQAISVAV
>Mature_310_residues
PEKHMDLRQLRYFIALNEHRSFVRAADAMGITQPAFSRSIQGLEQEFGCVLVDRGNKDLRPTPEGQVVLQHALTLVQGAA
LLSAEVTQMTKLDAGELHFGCGPAPAVKLVPDAVAQFINAHPKVRTCFQVDNWEKLSRALSREEIEFFIADIRHFESDPN
FQTQPLTPKRGVFFCRPGHPLLAKESLSTNDMFDYPLATTLIPPGIRKLLANLSGRIDFSPTIETEHFPALVKVVLQSNA
IGVGTEEAFVEDIAQGSLALLHWRNLPQNLESMNARCGIVSRTGFRLSPAARAMIETLVAVDKQAISVAV

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=260, Percent_Identity=24.6153846153846, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI157672245, Length=256, Percent_Identity=26.171875, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=189, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787530, Length=222, Percent_Identity=25.2252252252252, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787879, Length=125, Percent_Identity=36, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=208, Percent_Identity=24.5192307692308, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87081904, Length=204, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789492, Length=185, Percent_Identity=26.4864864864865, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34347; Mature: 34216

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKHMDLRQLRYFIALNEHRSFVRAADAMGITQPAFSRSIQGLEQEFGCVLVDRGNKDL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC
RPTPEGQVVLQHALTLVQGAALLSAEVTQMTKLDAGELHFGCGPAPAVKLVPDAVAQFIN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHC
AHPKVRTCFQVDNWEKLSRALSREEIEFFIADIRHFESDPNFQTQPLTPKRGVFFCRPGH
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC
PLLAKESLSTNDMFDYPLATTLIPPGIRKLLANLSGRIDFSPTIETEHFPALVKVVLQSN
CCEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
AIGVGTEEAFVEDIAQGSLALLHWRNLPQNLESMNARCGIVSRTGFRLSPAARAMIETLV
CCCCCCHHHHHHHHHCCCEEEEEHHCCHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHH
AVDKQAISVAV
HHHHHHHEECC
>Mature Secondary Structure 
PEKHMDLRQLRYFIALNEHRSFVRAADAMGITQPAFSRSIQGLEQEFGCVLVDRGNKDL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC
RPTPEGQVVLQHALTLVQGAALLSAEVTQMTKLDAGELHFGCGPAPAVKLVPDAVAQFIN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHC
AHPKVRTCFQVDNWEKLSRALSREEIEFFIADIRHFESDPNFQTQPLTPKRGVFFCRPGH
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC
PLLAKESLSTNDMFDYPLATTLIPPGIRKLLANLSGRIDFSPTIETEHFPALVKVVLQSN
CCEECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
AIGVGTEEAFVEDIAQGSLALLHWRNLPQNLESMNARCGIVSRTGFRLSPAARAMIETLV
CCCCCCHHHHHHHHHCCCEEEEEHHCCHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHH
AVDKQAISVAV
HHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]