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The map label for this gene is rpoE [H]

Identifier: 77456412

GI number: 77456412

Start: 223228

End: 223839

Strand: Direct

Name: rpoE [H]

Synonym: Pfl01_0184

Alternate gene names: 77456412

Gene position: 223228-223839 (Clockwise)

Preceding gene: 77456411

Following gene: 77456413

Centisome position: 3.47

GC content: 62.09

Gene sequence:

>612_bases
GTGAGCCGCCTCAAAGGCTTCATCACACAGCTGTTTGCTTTCGCCGACAGCCTTGAGGCCAGCAGCGACGAATCGCTGCT
GGCCCGTTATCGCGAGGGTGACGGCAAGGCGTTCGAGATCCTGTACGCCCGCCATCGGCAGAGTCTTTACCGGTTTCTGC
TCGGTTTGAGCGGCAAACCGGAACTGGCCGACGAGGTGTTCCAGGAGACCTGGCTGAGCCTGATCCGCAGTAGCAGTCAG
CCACAAGGCCGGGCGACCTTTCGTACGTGGTTGTTCCAGATTGCCCGCAATCGCCTGATTGACCACTGGCGCAAGCACGG
CGCCCGACAACCGCTGCATGACAGCTACGACGAGCAATTCCACGCCGTCAGCGACGATGCCTCGGATCCCGAACAACTGC
TCAACCTCAGCCGCGACAGCGAGCGCCTGGAGAGCGCTCTGCAATCCTTGCCCGCCGACCAGCGCGAAGTGTTTCTGCTT
CGTGCCCACGGCGACCTCGACCTGGCGCAAATCGCCAGCCTCACCGAAACACCGCTGGAAACCGTCAAGAGCCGCTTGCG
CTACGCCCAGCAAAAACTGCGTCGGCTGCTGGCCGAGGAGGTACTGACATGA

Upstream 100 bases:

>100_bases
TCGGCTTGCGCAACGAGTTCGTGCAACTGGTGGAACTGGCGCAGAGCCTGCGTACCTCCACCGCCTCCAACGGAATGTCC
ACTGAGCGACGGATTGAATA

Downstream 100 bases:

>100_bases
CGGACGCCCGCCCGACACCCGAAGAGCAAGTGCTCAAGCACGTGCGCGAACAGCACAACGCCGAACCGCCGGCACATCTC
GATGCGCTGATCCTCAACGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSRLKGFITQLFAFADSLEASSDESLLARYREGDGKAFEILYARHRQSLYRFLLGLSGKPELADEVFQETWLSLIRSSSQ
PQGRATFRTWLFQIARNRLIDHWRKHGARQPLHDSYDEQFHAVSDDASDPEQLLNLSRDSERLESALQSLPADQREVFLL
RAHGDLDLAQIASLTETPLETVKSRLRYAQQKLRRLLAEEVLT

Sequences:

>Translated_203_residues
MSRLKGFITQLFAFADSLEASSDESLLARYREGDGKAFEILYARHRQSLYRFLLGLSGKPELADEVFQETWLSLIRSSSQ
PQGRATFRTWLFQIARNRLIDHWRKHGARQPLHDSYDEQFHAVSDDASDPEQLLNLSRDSERLESALQSLPADQREVFLL
RAHGDLDLAQIASLTETPLETVKSRLRYAQQKLRRLLAEEVLT
>Mature_202_residues
SRLKGFITQLFAFADSLEASSDESLLARYREGDGKAFEILYARHRQSLYRFLLGLSGKPELADEVFQETWLSLIRSSSQP
QGRATFRTWLFQIARNRLIDHWRKHGARQPLHDSYDEQFHAVSDDASDPEQLLNLSRDSERLESALQSLPADQREVFLLR
AHGDLDLAQIASLTETPLETVKSRLRYAQQKLRRLLAEEVLT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=180, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23416; Mature: 23284

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLKGFITQLFAFADSLEASSDESLLARYREGDGKAFEILYARHRQSLYRFLLGLSGKP
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
ELADEVFQETWLSLIRSSSQPQGRATFRTWLFQIARNRLIDHWRKHGARQPLHDSYDEQF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
HAVSDDASDPEQLLNLSRDSERLESALQSLPADQREVFLLRAHGDLDLAQIASLTETPLE
HHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHEEEEECCCCCCHHHHHHHHHHHHH
TVKSRLRYAQQKLRRLLAEEVLT
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRLKGFITQLFAFADSLEASSDESLLARYREGDGKAFEILYARHRQSLYRFLLGLSGKP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
ELADEVFQETWLSLIRSSSQPQGRATFRTWLFQIARNRLIDHWRKHGARQPLHDSYDEQF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
HAVSDDASDPEQLLNLSRDSERLESALQSLPADQREVFLLRAHGDLDLAQIASLTETPLE
HHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHEEEEECCCCCCHHHHHHHHHHHHH
TVKSRLRYAQQKLRRLLAEEVLT
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]