Click here to switch to the map view.

The map label for this gene is ssuC [C]

Identifier: 77456368

GI number: 77456368

Start: 169015

End: 169881

Strand: Direct

Name: ssuC [C]

Synonym: Pfl01_0140

Alternate gene names: 77456368

Gene position: 169015-169881 (Clockwise)

Preceding gene: 77456367

Following gene: 77456369

Centisome position: 2.63

GC content: 61.13

Gene sequence:

>867_bases
ATGAGCCATTCATCATCCGTACGTCAAGAATTCGAAAACGATCTGCAACCGCTGACCAGCGTCCCGGTGGAGCGCGAGTT
GCCGCTGGGCCAGCGTCTGTGGCAACAGGGCTGGCTGCGCAAAAGCGTGATCCTGATTTTGCTCGCCGTGCTCTGGGAGG
TTGTGGCCCGGGTGCAGAACAACGACCTGCTGCTGCCGAGCTTCTTGCAGACCAGTCACGCGCTGTATGACGGCCTGCTC
AGCGGTGAATTGTTGGGCAAGGTGTGGATCTCGCTGGTGGTGCTGATCAAGGGTTACCTGATCGGCATCGTCCTCGCCTT
CGCCCTGACCACGCTGGCGGTTTCGACCCAGGTCGGTCGGGACTTGCTCAGCACCCTGACCTCAATGTTCAACCCGCTGC
CGGCGATTGCCCTGTTGCCGCTGGCGTTGCTGTGGTTCGGGCTGGGTCAGAACAGCCTGATATTCGTGCTGGTGCATTCG
GTGTTGTGGGCGCTGGCGCTGAACACTTACGCCGGGTTTCTCGGCGTTTCGGAAACCCTGCGCATGGCCGGGCGCAACTA
CGGCTTGAAGGGCATGCGCTTCGTGTTGTTCATCCTGATTCCGGCGGCACTGCCGTCGATCCTCGCCGGGCTGAAAATCG
GCTGGGCTTTCGCCTGGCGCACCTTGATCGCCGCCGAACTGGTGTTCGGTGCCACCAGCGGAAAGGGTGGCCTGGGCTGG
TACATCTTCCAGAATCGCAATGAGTTGTACACCGACAAGGTGTTTGCCGGTCTGGCGGTGGTGATCCTCATCGGCTTGCT
GGTGGAAAACCTGGTGTTCGACACGCTGGAGCGGGTGACGGTGAAACGCTGGGGGATGCAGCGCTGA

Upstream 100 bases:

>100_bases
ACCGATTGCTGTTCGATGAAGGGCAGTCGCCGGAAACCGAGCGCGAACTGGATTTCACTGATATCCGCATCGCTTATTGA
GCCGCCTGGAGGATTGCCCG

Downstream 100 bases:

>100_bases
TTTTCTGATCTGCTAGCATTGCGTGCGAATCAATCCTGATCGGTCACGAGTGCTCAGCATGCAACTCCCGGACATGAACC
TGTTGGTCGCCCTCGACGCC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSHSSSVRQEFENDLQPLTSVPVERELPLGQRLWQQGWLRKSVILILLAVLWEVVARVQNNDLLLPSFLQTSHALYDGLL
SGELLGKVWISLVVLIKGYLIGIVLAFALTTLAVSTQVGRDLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHS
VLWALALNTYAGFLGVSETLRMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGW
YIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTLERVTVKRWGMQR

Sequences:

>Translated_288_residues
MSHSSSVRQEFENDLQPLTSVPVERELPLGQRLWQQGWLRKSVILILLAVLWEVVARVQNNDLLLPSFLQTSHALYDGLL
SGELLGKVWISLVVLIKGYLIGIVLAFALTTLAVSTQVGRDLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHS
VLWALALNTYAGFLGVSETLRMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGW
YIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTLERVTVKRWGMQR
>Mature_287_residues
SHSSSVRQEFENDLQPLTSVPVERELPLGQRLWQQGWLRKSVILILLAVLWEVVARVQNNDLLLPSFLQTSHALYDGLLS
GELLGKVWISLVVLIKGYLIGIVLAFALTTLAVSTQVGRDLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSV
LWALALNTYAGFLGVSETLRMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGWY
IFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTLERVTVKRWGMQR

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=206, Percent_Identity=31.5533980582524, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786564, Length=220, Percent_Identity=30.4545454545455, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31829; Mature: 31698

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSSSVRQEFENDLQPLTSVPVERELPLGQRLWQQGWLRKSVILILLAVLWEVVARVQN
CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDLLLPSFLQTSHALYDGLLSGELLGKVWISLVVLIKGYLIGIVLAFALTTLAVSTQVGR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYAGFLGVSETL
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGW
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
YIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTLERVTVKRWGMQR
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SHSSSVRQEFENDLQPLTSVPVERELPLGQRLWQQGWLRKSVILILLAVLWEVVARVQN
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NDLLLPSFLQTSHALYDGLLSGELLGKVWISLVVLIKGYLIGIVLAFALTTLAVSTQVGR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYAGFLGVSETL
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGW
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
YIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTLERVTVKRWGMQR
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]