Click here to switch to the map view.

The map label for this gene is sctJ [H]

Identifier: 76819642

GI number: 76819642

Start: 880092

End: 880940

Strand: Direct

Name: sctJ [H]

Synonym: BURPS1710b_A0683

Alternate gene names: 76819642

Gene position: 880092-880940 (Clockwise)

Preceding gene: 76818444

Following gene: 76818090

Centisome position: 27.66

GC content: 72.56

Gene sequence:

>849_bases
ATGAAACCACTCCGTCTCCCGATTTCCGCCGCCGGCGCGCGCCGCGCCGCCCGCCTCGCCGCGCTCGTCGCGTGCGTGGC
GCTCTTCGCCGGCTGCCGGCAGGAGCTGTACGGCGGCCTCGCCGAGCGCGACTGCAACGAGATGATGGCCGCGCTGCTGC
AAAACGGCGTCGACGCGCAGAAGAAGACGCCCGACGGCGGCAAGACATGGACGCTCGCCGTCGACGACAAGCAGATCGTC
AAGGCGATGGAAGTGCTGCGCGCGCGCGGGCTGCCCGCGACGCGCTACGACGATCTCGGCGCGCTGTTCAAGAAGGACGG
CCTCGTGTCGACGCCGACCGAGGAGCGCGTGCGCTTCATCTACGGCGTGTCGCAGGAGCTGTCGGACACGCTGTCGAAAA
TCGACGGCGTCGTCGTCGCGCGCGTGCACATCGTGCTGCCGAACAACGATCCGCTCGCGCAGGTCGCGAAGCCCTCGTCG
GCCTCGGTGTTCATCAAGTACCGGCCGAACGCGAATCTCGCGACGCTCACGCCGCAGATCAAGAACCTCGTCGTTCATAG
CGTCGAAGGGCTGACGTACGACGAAGTGAGCGTCACCTCCGTCGCGGCCGATCCGGTCGATCTCGTGTCGGCCGCGCAGC
CCGCCGCGCAGAACTCCCGCGGCGCGACGCTCGTCGGCGTGCTGATCGCGCTCGCCGTGGGCGGCGCGCTCGCGGCCGCG
GGCGGCGCGCTGTGGTGGCGCGCGCGCAAGCGCGGCGGCGGCGCGGGCGCGCACGGGATCGCCGCGCGGCCGCGCGGCGG
CGCCCGCGACGCGAAGGCCGCCGCGCCCCGGCAGGCCGGCGCGCAATGA

Upstream 100 bases:

>100_bases
CGGCCGAAGCGACCGCGATGCAGATCGACATGCAGGCGAAGATGGGCGTCGTCACGTCGACGAAGGACGCGATCGGCTCG
CTGATGAAGAACCAGTGATC

Downstream 100 bases:

>100_bases
CGGGCGGCGCGCCGGTGGCGAGCGTCGAGGCCCGGGCCGCGTGGCTCGTGGGCTACGACGCGAACGCGCGACGCGCGGCG
GACTGGGTCCACGCGAGCTG

Product: lipoprotein transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MKPLRLPISAAGARRAARLAALVACVALFAGCRQELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIV
KAMEVLRARGLPATRYDDLGALFKKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSS
ASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVTSVAADPVDLVSAAQPAAQNSRGATLVGVLIALAVGGALAAA
GGALWWRARKRGGGAGAHGIAARPRGGARDAKAAAPRQAGAQ

Sequences:

>Translated_282_residues
MKPLRLPISAAGARRAARLAALVACVALFAGCRQELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIV
KAMEVLRARGLPATRYDDLGALFKKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSS
ASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVTSVAADPVDLVSAAQPAAQNSRGATLVGVLIALAVGGALAAA
GGALWWRARKRGGGAGAHGIAARPRGGARDAKAAAPRQAGAQ
>Mature_282_residues
MKPLRLPISAAGARRAARLAALVACVALFAGCRQELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIV
KAMEVLRARGLPATRYDDLGALFKKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSS
ASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVTSVAADPVDLVSAAQPAAQNSRGATLVGVLIALAVGGALAAA
GGALWWRARKRGGGAGAHGIAARPRGGARDAKAAAPRQAGAQ

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 29359; Mature: 29359

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLRLPISAAGARRAARLAALVACVALFAGCRQELYGGLAERDCNEMMAALLQNGVDAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCCC
KKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATRYDDLGALFKKDGLVSTPTEERVRFI
CCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
YGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQI
HHCCHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHCCCCCCEEEEEECCCCCEEEECHHH
KNLVVHSVEGLTYDEVSVTSVAADPVDLVSAAQPAAQNSRGATLVGVLIALAVGGALAAA
HHHHHHHHCCCEECCEEEEHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GGALWWRARKRGGGAGAHGIAARPRGGARDAKAAAPRQAGAQ
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCHHCCCC
>Mature Secondary Structure
MKPLRLPISAAGARRAARLAALVACVALFAGCRQELYGGLAERDCNEMMAALLQNGVDAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCCC
KKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPATRYDDLGALFKKDGLVSTPTEERVRFI
CCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHH
YGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRPNANLATLTPQI
HHCCHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHCCCCCCEEEEEECCCCCEEEECHHH
KNLVVHSVEGLTYDEVSVTSVAADPVDLVSAAQPAAQNSRGATLVGVLIALAVGGALAAA
HHHHHHHHCCCEECCEEEEHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GGALWWRARKRGGGAGAHGIAARPRGGARDAKAAAPRQAGAQ
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]