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The map label for this gene is glxA [H]

Identifier: 76819509

GI number: 76819509

Start: 556697

End: 557887

Strand: Direct

Name: glxA [H]

Synonym: BURPS1710b_A0397

Alternate gene names: 76819509

Gene position: 556697-557887 (Clockwise)

Preceding gene: 76818901

Following gene: 76818645

Centisome position: 17.5

GC content: 71.62

Gene sequence:

>1191_bases
ATGACCGCCGACGTACCCGCCTCCCCCCTCGCCGCCGATTCCGCGCAGCCGCGCCTGCGCTTCGGGATCGTGCTGCTGCC
GAACTTCACGCTGACCGCGTTCTCGGGGTTCGTCGACATGCTGCGGCTGTCCGCCGACGACGGCGACCACAGCAAGCCCG
TGCGCTGCTCATGGACGGTGATCGGCGATACGCTCGCGCCCGTGCGCGCGAGCTGCGGAATCCAGCTGACGCCGTGGCAG
ACGTTCGACGCAGCCGACGCGTTCGACTACGTGGTCGTCGTGGGTGGCCTGCTGCATTCGGGGCCGCAGGCCGGGCCGCA
GACGCTCGAATTCATCCGCCGCGCGGCCGCGGCGGGCGCGAACCTCGTCGGCATCTGCACCGGCGCGTTCGCGCTGATGC
GCGCGGGCGTGCTCGACGGGCACCGCGTGTGCGTGAGCTGGTTCCATTATTGGGACTTCGTCGAGCGCTTCCCGGGCGCC
GATCCGGATCTGCTGATCGCCGATCGGCTGTTCGTGATCGACCGGCGGCGGATCACGTGCTCGGGCGGGCGCGCGTCGAT
CGACGTCGCCGCGGCGATCCTGCTGCGCCACTTCGATCATGCGACGGTGCAAAAGGCGCTGCGCATCCTGCTCGTCGGCG
AGATGCAGAAAGGCAACGCGCCGCAGCCGCACCCGCCGGGGCTCGAGCCCGCGACGCATCCGAAGGTCAAGCGCGCGATC
CTGCTGATGGAACAGCACGTCGGGCGCGCGCTGCCGCTCGACGAACTCGCGTGCAAGCTCGACCTGTCGACGCGGCAGCT
CGAGCGGCTGTTCAAGGCCCAGACGGGCAAGAGCCCGCAGGCGTTCGCCAAGCAGGTGCGGCTGCGCACGGCCGCGTGGC
TGCTGACGAGCTCGGACCGCACCGTCGCCGACATCGCGTCGAGCTGCGGGTTCGCCGACGCCTCGCACCTCGGGCGCGAG
TTCCGCAAGCAGTTCGGCGCGCCGCCCGCAGCTTACCGCGAGAAAGGCGGCGCGGCGGGCGACGCGGACGCGGATGCGGG
TGCGGGTGCGGGTGCGGACGCTAACGCGGGCGCGATGGGCGGTGCACGGCCCCGTCCAGACGCGGATGGGGGGCCGGAAG
CGGATTTCGACGCGAATACGCGTAAGCACCCCGACGACGATCCGACCGGCGGCGGGAGGGACGCTCGCTGA

Upstream 100 bases:

>100_bases
GGCGACGCTCGCAGTACGGACTGCGCGGCGGGCGGCCTTCGGACGCCCGCGGACCGCAGATACACCGGGTCGCGCCCGGC
CAACCGACGATTTAGCAGAC

Downstream 100 bases:

>100_bases
GCGCGGCGTCCCGGGCATGGCGAGCGGCATCGCGCGCGGCGTGTCGCGGCGTGTCGCGGCGGGCAACGGTGTCGCGCAAT
CGGCCCGCGCGAGCCGCGAT

Product: AraC/XylS family transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTADVPASPLAADSAQPRLRFGIVLLPNFTLTAFSGFVDMLRLSADDGDHSKPVRCSWTVIGDTLAPVRASCGIQLTPWQ
TFDAADAFDYVVVVGGLLHSGPQAGPQTLEFIRRAAAAGANLVGICTGAFALMRAGVLDGHRVCVSWFHYWDFVERFPGA
DPDLLIADRLFVIDRRRITCSGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAI
LLMEQHVGRALPLDELACKLDLSTRQLERLFKAQTGKSPQAFAKQVRLRTAAWLLTSSDRTVADIASSCGFADASHLGRE
FRKQFGAPPAAYREKGGAAGDADADAGAGAGADANAGAMGGARPRPDADGGPEADFDANTRKHPDDDPTGGGRDAR

Sequences:

>Translated_396_residues
MTADVPASPLAADSAQPRLRFGIVLLPNFTLTAFSGFVDMLRLSADDGDHSKPVRCSWTVIGDTLAPVRASCGIQLTPWQ
TFDAADAFDYVVVVGGLLHSGPQAGPQTLEFIRRAAAAGANLVGICTGAFALMRAGVLDGHRVCVSWFHYWDFVERFPGA
DPDLLIADRLFVIDRRRITCSGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAI
LLMEQHVGRALPLDELACKLDLSTRQLERLFKAQTGKSPQAFAKQVRLRTAAWLLTSSDRTVADIASSCGFADASHLGRE
FRKQFGAPPAAYREKGGAAGDADADAGAGAGADANAGAMGGARPRPDADGGPEADFDANTRKHPDDDPTGGGRDAR
>Mature_395_residues
TADVPASPLAADSAQPRLRFGIVLLPNFTLTAFSGFVDMLRLSADDGDHSKPVRCSWTVIGDTLAPVRASCGIQLTPWQT
FDAADAFDYVVVVGGLLHSGPQAGPQTLEFIRRAAAAGANLVGICTGAFALMRAGVLDGHRVCVSWFHYWDFVERFPGAD
PDLLIADRLFVIDRRRITCSGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAIL
LMEQHVGRALPLDELACKLDLSTRQLERLFKAQTGKSPQAFAKQVRLRTAAWLLTSSDRTVADIASSCGFADASHLGREF
RKQFGAPPAAYREKGGAAGDADADAGAGAGADANAGAMGGARPRPDADGGPEADFDANTRKHPDDDPTGGGRDAR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=155, Percent_Identity=29.0322580645161, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 42056; Mature: 41925

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADVPASPLAADSAQPRLRFGIVLLPNFTLTAFSGFVDMLRLSADDGDHSKPVRCSWTV
CCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
IGDTLAPVRASCGIQLTPWQTFDAADAFDYVVVVGGLLHSGPQAGPQTLEFIRRAAAAGA
ECCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
NLVGICTGAFALMRAGVLDGHRVCVSWFHYWDFVERFPGADPDLLIADRLFVIDRRRITC
CEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCEEEE
SGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAI
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LLMEQHVGRALPLDELACKLDLSTRQLERLFKAQTGKSPQAFAKQVRLRTAAWLLTSSDR
HHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCC
TVADIASSCGFADASHLGREFRKQFGAPPAAYREKGGAAGDADADAGAGAGADANAGAMG
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
GARPRPDADGGPEADFDANTRKHPDDDPTGGGRDAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TADVPASPLAADSAQPRLRFGIVLLPNFTLTAFSGFVDMLRLSADDGDHSKPVRCSWTV
CCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
IGDTLAPVRASCGIQLTPWQTFDAADAFDYVVVVGGLLHSGPQAGPQTLEFIRRAAAAGA
ECCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
NLVGICTGAFALMRAGVLDGHRVCVSWFHYWDFVERFPGADPDLLIADRLFVIDRRRITC
CEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECEEEEEECCEEEE
SGGRASIDVAAAILLRHFDHATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAI
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
LLMEQHVGRALPLDELACKLDLSTRQLERLFKAQTGKSPQAFAKQVRLRTAAWLLTSSDR
HHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEECCCC
TVADIASSCGFADASHLGREFRKQFGAPPAAYREKGGAAGDADADAGAGAGADANAGAMG
HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
GARPRPDADGGPEADFDANTRKHPDDDPTGGGRDAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]