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The map label for this gene is ycdC [C]

Identifier: 76818956

GI number: 76818956

Start: 687520

End: 688194

Strand: Direct

Name: ycdC [C]

Synonym: BURPS1710b_A0502

Alternate gene names: 76818956

Gene position: 687520-688194 (Clockwise)

Preceding gene: 76819544

Following gene: 76819672

Centisome position: 21.61

GC content: 62.67

Gene sequence:

>675_bases
ATGAAACAAGGAAGCAAGGCCGCAGCGCCCGACGCCGAAGCGCGGCGAGACGAGGCGCGCCGCAAATACGACCCCGAGCA
GACGAAGCGCAATATTCTCGACGTCGCCACGCAGGAATTCTCCGCGATGGGACTGTCGGGGGCGCGCGTCGACGCGATCG
CCGAACGCACGAACACGACGAAGCGGATGCTCTATTACTACTTCGACAGCAAGGAAGGGTTGTACGAGGCAGTGCTGGAG
AAGGTCTACGGCGACATCCGCACGCTCGAGCGCGAACTGAACGTCGGCGAGCTGGAGCCGCGCGAAGGGCTGAGCCGGCT
CGTCGAATTCACGTTCGACTATCACGACAGGCATCGCGATTTCGTGCGCCTCGTGACGATCGAGAACATTCACGGCGCGA
AATACATCGAGCAGTTGAAGTCGTTCAAGAACCGCAACGTCAGCATCATCAAGACGCTCGAGGAACTGCTCGCGCGCGGC
GTCGAAAGCGGCGTGTTCCGCGACGACGTCGATCCGTTCGATCTGCATCTGCTCATCAGCTCGTTCTGCTTTCATCGCGT
CGCGAACCGCTATACGTTCGGCACGGCGTTCGGCCGCGATCCGTCGTCGCCGCGGCTGCGCGCGCGGCATCGGGCGATGA
TCACCGACACCGTGCTGCGCTACGTCGCCCGCTGA

Upstream 100 bases:

>100_bases
CAGCCCTTTCGTCAGCGCCTTTAGAGCCCGGAGTCGGGCAAAAGCCGCGTGGGGCGCGTGCTAGAATGCGCCGACCATGC
CGCCGTCCGATCACGCCAAA

Downstream 100 bases:

>100_bases
TCGCACGCTGGCTCGGGCGCGATGCCGCCCGAAGCAATCGCCGCGCGGTGGTCGGCGGCGGCTGCGGCGCGCCGGGCTCA
CCGGTCCGCGCATCGGGCTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; TetR-Family Transcriptional Regulatory Protein; HTH-Type Transcriptional Regulator; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcriptional Regulator Protein TetR Family; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcriptional Regulator TetR; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTTKRMLYYYFDSKEGLYEAVLE
KVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTLEELLARG
VESGVFRDDVDPFDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR

Sequences:

>Translated_224_residues
MKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTTKRMLYYYFDSKEGLYEAVLE
KVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTLEELLARG
VESGVFRDDVDPFDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR
>Mature_224_residues
MKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTTKRMLYYYFDSKEGLYEAVLE
KVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRDFVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTLEELLARG
VESGVFRDDVDPFDLHLLISSFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25959; Mature: 25959

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTT
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHH
KRMLYYYFDSKEGLYEAVLEKVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRD
HEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTLEELLARGVESGVFRDDVDPFDLHLLIS
HHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
SFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQGSKAAAPDAEARRDEARRKYDPEQTKRNILDVATQEFSAMGLSGARVDAIAERTNTT
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHH
KRMLYYYFDSKEGLYEAVLEKVYGDIRTLERELNVGELEPREGLSRLVEFTFDYHDRHRD
HEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FVRLVTIENIHGAKYIEQLKSFKNRNVSIIKTLEELLARGVESGVFRDDVDPFDLHLLIS
HHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
SFCFHRVANRYTFGTAFGRDPSSPRLRARHRAMITDTVLRYVAR
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA