Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 76818653

GI number: 76818653

Start: 2084765

End: 2085847

Strand: Direct

Name: yjcF [C]

Synonym: BURPS1710b_A1705

Alternate gene names: 76818653

Gene position: 2084765-2085847 (Clockwise)

Preceding gene: 76819210

Following gene: 76818273

Centisome position: 65.52

GC content: 67.59

Gene sequence:

>1083_bases
ATGAGCACGCGCGCGGATCGATTGCGCGACGCGATCCGGCATGGCCGCGCGATTCGCGACACCGCGATCGACGCGGGCGA
CTTCGACGGGCACGACTGGTCGGGCGGGGTGTTCGAGCGCGTCCGGTTCATCGGCGTATCGATGAAGCGCGTGCGACTCG
ACGAGGCCGTATTCATCGATTGTCTGTTTCGCGACGTCGACATGCGGCAAGCGGGCTGCGCGCGATGCACGTTCGATCGA
TGCCGGCTCGAACGCGTCGATCTTTCGGCAAGCGAGCTTCGCGACTGCATGATGAACGGGACGCATGCGGCCGGCGTGTA
TTTTTCCGGTGCGCGGGCGAGCGGTTTGCATTGCGTGAAGAGCGATCTCGGCGATTGCGGGTTCGACGACGCGCGGATCG
AATCGGCGGTGTTCAGCGACACGCGGCTCGCGCGCGCGGCCTTCACGCGGGCCGCGGTGCGCAAGGCGGTTTTCTATCGG
CTCGATCTGACATCGGCCGTTTTCGCCGATGCGGCGTTCGACGATACCGTTTTTGCCGAAGCGAACCTGGCCGGCCAGCG
CTTGCAAGGCCAGCGGATGCACCGCTGCCAGTTCGTCGGCGCGGACCTTCGTCATGCCGATTTCACCGGGGCGCGCCTCG
CCGGCTGCAACTTCCAGCGCGCGAAGCTGACGGGCGCGCGGCTGGACGGCGTCGACGCGCCGAACACCGTCTTTTTCGAG
GCCGACGCGCCGGATGCGACGTGCCGTGACGCGGCGCTGCGCGGCAGCATCTGGGTGCAGGCCGACGCCCGGCGCATCGA
TTTCACCGGCTCGGAACTGGACGGCGCGGTATTTCAGCGCGCGACGTGCACGGGTGCGCGCTTTTCGCGGGCGAAGCTCG
AAGGCGCGGATTTTTCGTACGCGGATCTGACCGGAGCCGTGTTCGACGAGGCCGGTTTCGCGCGAACCGCGTTTCACGGC
GCGACGGCGCCGGCGATTGCGTGGCGCGATCATCCGGGCGCCGTCGCGTGCGATGCGGAATTGTCGGATGCGCAGGCGTG
GTCGCGGCAAAGGGACGAGCAGGCGCGGCGCGAAGAATGTTGA

Upstream 100 bases:

>100_bases
TTCGCGCGAACCTCTCGCAGATCCTCACCGATGCCGATACGCGCTGGCAGGGCGCGTACCTGAACCGGGCGGTGCGGTTT
CCGCTGGCGGAGGCGCGCAC

Downstream 100 bases:

>100_bases
GCGCGACGGCAGCGGAGCGCCGTCGCTCGCGCATCGCGCATGCGCCGCTTCGTCTGCGCTTCGCCGCCGGCTCGGAGCCG
GTGCGTTGTCGGCGCGTTGC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSTRADRLRDAIRHGRAIRDTAIDAGDFDGHDWSGGVFERVRFIGVSMKRVRLDEAVFIDCLFRDVDMRQAGCARCTFDR
CRLERVDLSASELRDCMMNGTHAAGVYFSGARASGLHCVKSDLGDCGFDDARIESAVFSDTRLARAAFTRAAVRKAVFYR
LDLTSAVFADAAFDDTVFAEANLAGQRLQGQRMHRCQFVGADLRHADFTGARLAGCNFQRAKLTGARLDGVDAPNTVFFE
ADAPDATCRDAALRGSIWVQADARRIDFTGSELDGAVFQRATCTGARFSRAKLEGADFSYADLTGAVFDEAGFARTAFHG
ATAPAIAWRDHPGAVACDAELSDAQAWSRQRDEQARREEC

Sequences:

>Translated_360_residues
MSTRADRLRDAIRHGRAIRDTAIDAGDFDGHDWSGGVFERVRFIGVSMKRVRLDEAVFIDCLFRDVDMRQAGCARCTFDR
CRLERVDLSASELRDCMMNGTHAAGVYFSGARASGLHCVKSDLGDCGFDDARIESAVFSDTRLARAAFTRAAVRKAVFYR
LDLTSAVFADAAFDDTVFAEANLAGQRLQGQRMHRCQFVGADLRHADFTGARLAGCNFQRAKLTGARLDGVDAPNTVFFE
ADAPDATCRDAALRGSIWVQADARRIDFTGSELDGAVFQRATCTGARFSRAKLEGADFSYADLTGAVFDEAGFARTAFHG
ATAPAIAWRDHPGAVACDAELSDAQAWSRQRDEQARREEC
>Mature_359_residues
STRADRLRDAIRHGRAIRDTAIDAGDFDGHDWSGGVFERVRFIGVSMKRVRLDEAVFIDCLFRDVDMRQAGCARCTFDRC
RLERVDLSASELRDCMMNGTHAAGVYFSGARASGLHCVKSDLGDCGFDDARIESAVFSDTRLARAAFTRAAVRKAVFYRL
DLTSAVFADAAFDDTVFAEANLAGQRLQGQRMHRCQFVGADLRHADFTGARLAGCNFQRAKLTGARLDGVDAPNTVFFEA
DAPDATCRDAALRGSIWVQADARRIDFTGSELDGAVFQRATCTGARFSRAKLEGADFSYADLTGAVFDEAGFARTAFHGA
TAPAIAWRDHPGAVACDAELSDAQAWSRQRDEQARREEC

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 39434; Mature: 39303

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRADRLRDAIRHGRAIRDTAIDAGDFDGHDWSGGVFERVRFIGVSMKRVRLDEAVFID
CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
CLFRDVDMRQAGCARCTFDRCRLERVDLSASELRDCMMNGTHAAGVYFSGARASGLHCVK
HHHHCCCHHHCCCHHCCHHHHHHHHCCCCHHHHHHHHHCCCEECCEEECCCCCCCCHHHH
SDLGDCGFDDARIESAVFSDTRLARAAFTRAAVRKAVFYRLDLTSAVFADAAFDDTVFAE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCCCEEEE
ANLAGQRLQGQRMHRCQFVGADLRHADFTGARLAGCNFQRAKLTGARLDGVDAPNTVFFE
CCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHEECCCCCCCCCCCCEEEEE
ADAPDATCRDAALRGSIWVQADARRIDFTGSELDGAVFQRATCTGARFSRAKLEGADFSY
CCCCCCHHHHHHHCCCEEEEECCEEEECCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCH
ADLTGAVFDEAGFARTAFHGATAPAIAWRDHPGAVACDAELSDAQAWSRQRDEQARREEC
HHHHHHHHHCCCCHHHHHCCCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STRADRLRDAIRHGRAIRDTAIDAGDFDGHDWSGGVFERVRFIGVSMKRVRLDEAVFID
CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
CLFRDVDMRQAGCARCTFDRCRLERVDLSASELRDCMMNGTHAAGVYFSGARASGLHCVK
HHHHCCCHHHCCCHHCCHHHHHHHHCCCCHHHHHHHHHCCCEECCEEECCCCCCCCHHHH
SDLGDCGFDDARIESAVFSDTRLARAAFTRAAVRKAVFYRLDLTSAVFADAAFDDTVFAE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHCCCCCCEEEE
ANLAGQRLQGQRMHRCQFVGADLRHADFTGARLAGCNFQRAKLTGARLDGVDAPNTVFFE
CCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHEECCCCCCCCCCCCEEEEE
ADAPDATCRDAALRGSIWVQADARRIDFTGSELDGAVFQRATCTGARFSRAKLEGADFSY
CCCCCCHHHHHHHCCCEEEEECCEEEECCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCH
ADLTGAVFDEAGFARTAFHGATAPAIAWRDHPGAVACDAELSDAQAWSRQRDEQARREEC
HHHHHHHHHCCCCHHHHHCCCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]