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The map label for this gene is pecT [H]

Identifier: 76818521

GI number: 76818521

Start: 1135250

End: 1136125

Strand: Direct

Name: pecT [H]

Synonym: BURPS1710b_A0874

Alternate gene names: 76818521

Gene position: 1135250-1136125 (Clockwise)

Preceding gene: 76818899

Following gene: 76818853

Centisome position: 35.68

GC content: 76.48

Gene sequence:

>876_bases
ATGAAACCACTCGATCTCGACGCCGTTCGCGCGTTCGTGCTCGTCGCCGAACTCGCGAGCTTCACGCGCGCCGCCGACGC
GCTCGGCACCACGCAATCCGCCGTCAGCCTGAAGCTCAAGCGGCTCGAGGCGCAGCTCGGCAAGCCGCTGCTCGAGCGCA
CGCCGCGACGCGTGACGCTCGCCGCCGTCGGCGCCGCGTTCCTGCCCGCCGCGCGCGAGCTGCTCGACGCGCACGAGCGT
GCGCTCGCCGCGCTGTCGTCCGCGCAGCGCAGGCTCGTGATCGGCGTGAGCGAGCACGTCGCGGTGCCGGATCTGCCCGC
CGTCCTCACCGGCCTGAACCGGCACGATCCGGGGCTCACGCTCGAGATGCATGTCGGAATGTCGGCCGGGCTGCTCGCGC
AATACGACGAGCGGCGGCTCGACGCGGCGTTCGTGCGCCACGAGCCCGGCGAAGACCCGCCGCGCGACGACGCGACGCTG
CTTTTCACCGAGCCGCTCGCGTGGCTCGCCGCGCCCGGCTGGACGCCGCGCGCGGACGAGCCGCTGCCGCTCGCGGTGCT
GGCGGGCCCGTGCGGCGTGCGCGCGGCCGCGCTGCGCGCGCTCGAGCGCGCCGGCGTGCGGTGGCGCGAGCGTTTCACAG
GCGGCGGCGTCGCGGCCGTCGCGGCGGCGGCCGCCGCGGGGCTGGCGGTGTGCCCGCTGGCCCGCCGCGTCGCGCCGCGC
TCGCTCGTCGACGTCGGCGCGCGCTTGCGCCTGCCCGCCTTGCCCGATTCGCAAGTCGCGCTGTATTCGCGGGTGCGCGA
CGCGCGCTCGATCGACACGCTGCGGCGCTTCGCCGACAGCCTGGCGGGGCCGGCGCAATCGGCCGGACGCGAGTAG

Upstream 100 bases:

>100_bases
CATCGGGTTTCTCCTTGACGGTTGGGACACGCATGCAGCTTAGAAGCCCACATCTATAATGAACAGACATCAATGAATAT
TTCATCCATTTCCATTTGAA

Downstream 100 bases:

>100_bases
ACTGTCAGGTTTTCGTTGGCCGACCGGCCGCCTTTCGCGCGGCTTTCGCACGCCTGCCGCCGCCGCATGAAACACGACGC
CCGCAAACACCTTCGCGCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTLAAVGAAFLPAARELLDAHER
ALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLTLEMHVGMSAGLLAQYDERRLDAAFVRHEPGEDPPRDDATL
LFTEPLAWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
SLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE

Sequences:

>Translated_291_residues
MKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTLAAVGAAFLPAARELLDAHER
ALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLTLEMHVGMSAGLLAQYDERRLDAAFVRHEPGEDPPRDDATL
LFTEPLAWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
SLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE
>Mature_291_residues
MKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTLAAVGAAFLPAARELLDAHER
ALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLTLEMHVGMSAGLLAQYDERRLDAAFVRHEPGEDPPRDDATL
LFTEPLAWLAAPGWTPRADEPLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
SLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=288, Percent_Identity=31.5972222222222, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788887, Length=171, Percent_Identity=35.0877192982456, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=81, Percent_Identity=40.7407407407407, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994962, Length=165, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=198, Percent_Identity=31.8181818181818, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787806, Length=144, Percent_Identity=30.5555555555556, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30824; Mature: 30824

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEEH
AAVGAAFLPAARELLDAHERALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCE
LEMHVGMSAGLLAQYDERRLDAAFVRHEPGEDPPRDDATLLFTEPLAWLAAPGWTPRADE
EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCCC
PLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
CCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHH
SLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE
HHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MKPLDLDAVRAFVLVAELASFTRAADALGTTQSAVSLKLKRLEAQLGKPLLERTPRRVTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCEEEH
AAVGAAFLPAARELLDAHERALAALSSAQRRLVIGVSEHVAVPDLPAVLTGLNRHDPGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCE
LEMHVGMSAGLLAQYDERRLDAAFVRHEPGEDPPRDDATLLFTEPLAWLAAPGWTPRADE
EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCCC
PLPLAVLAGPCGVRAAALRALERAGVRWRERFTGGGVAAVAAAAAAGLAVCPLARRVAPR
CCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHH
SLVDVGARLRLPALPDSQVALYSRVRDARSIDTLRRFADSLAGPAQSAGRE
HHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]