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The map label for this gene is yhdP [H]

Identifier: 76818356

GI number: 76818356

Start: 1138070

End: 1139410

Strand: Direct

Name: yhdP [H]

Synonym: BURPS1710b_A0877

Alternate gene names: 76818356

Gene position: 1138070-1139410 (Clockwise)

Preceding gene: 76819248

Following gene: 76817683

Centisome position: 35.77

GC content: 66.74

Gene sequence:

>1341_bases
TTGATACAGATCTTCGCGCTCATCGGCGCGTTGCTCCTCGTGGCCCTCAACGGCTTTTTCGTCGCCGCCGAATTCGGTCT
CGTCAAACTGCGCGCGACGCGCGTGAAAACCCTCGCCCGCCAGCACGGCCTGCGCGGACGCATCCTGCGGATCGTCCATG
CGCGGCTGGATGCGTACCTGTCCGCCTGCCAGCTCGGCATCACGCTCGCGTCGCTCGGCCTCGGCTGGATCGGCGAGCCG
GCGTTCGCCGCGCTGCTGTCGCCCGTGCTCGCGCTCGCGGGCGTCGAATCGGAAAAGCTCGTGCATCTGATCTCGCTCGT
GTTCGCGTTCTCGGTGATCTCGTTCCTGCACATCGTCGTCGGCGAGCTCGCGCCGAAATCGATGGCGATCCGTCAGGCCG
AGAAGACGGGCCTCTGGGTCGCGCTCCCGCTCTATGCGTTCTACTGGGCGATGTATCCGGCGATCTGGGTGCTCAACACG
AGCGCGAACGCGGTGCTGCGGCTCGCGGGGCTGTCCGCCGATCACGGCGGCGACGCGCACTACTCGACCGACGAGCTGAA
GCTGATCCTGCGCAGCCGCCGCAACGCGGCCGGCGCCGCGAAAGCGCCGAAGCACGCGTACAGCAACGACGAATGGAACA
CGCTCGCGCACTCGCTCGATTTTTCGTCGATGACCGTATCGGATCTGATGCGCCCCGCGCACGAGATGGTGGGCCTGCGC
CGCGATCTGCCGCTCGCGGACAACATGGAAGTCGTCGCGCGCCACCGCTTCAGCCGCTATCCGCTGTTCGACGACCAATC
GCGCGAAACCGTGAACGGCCTCATCCACCTGAAGGATCTGCTGCTCGCGCGGCACGCGGGCGCGGCGCTCGCCGATCTGT
CCGATTATGTGCGCCCGGTGCAGTACGTGAAGCCGGACACGCCCGCGCTCGACCTGTTCCGGCGCTTCCGCAAGGGCGCG
CCGCACTTCGCGCTCGTCGGCAAGAAAGGCGAGAAGCCGATCGGCTTTCTCACGCTCGACAACCTGCTCGGCGCGCTCGT
CGGCCAGATCCACGACGAATTCCGGCAGGGCGATTCGGACTGGAGCCGGCTCGACGACGGCACGCTGATCGGCAAGGGCA
GCCTGCCCGTCGTGTCGCTCGAGCAGGCGCTCGGCATCGACATCGACGAAGGGCGCGCGGAATCGGTCGGCGGCCTCGTC
ATTCAGGCGCTCAACGATCTGCCGACGGAAGGCCGGCGCGTATCGTTCGATCGCTTCGACATCGTCGTGAAAAAGATGAT
CGGGCCGCGAATCGTGCTCGTGCGCGTGTATCCGAAGGCGCCCAAGGAAGCGGACGAGTGA

Upstream 100 bases:

>100_bases
GCCGCTCGCGCGTGATCGGCCGCGCGCGTCGCGACACTCGATATTACGTTTACCTTTCCAACCTTATACTGTCGCTTCGT
TCATTCTCGGAGTTCCTTCG

Downstream 100 bases:

>100_bases
GCGCGCGCGATGGCGACCGCGCCGCGGATCACGACATGCACGACGACCTCGCGCTGCCGCCGTACTACCTGATCACGCCG
GAGCCCGCCTCGGGTTCCGA

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYLSACQLGITLASLGLGWIGEP
AFAALLSPVLALAGVESEKLVHLISLVFAFSVISFLHIVVGELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNT
SANAVLRLAGLSADHGGDAHYSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPVQYVKPDTPALDLFRRFRKGA
PHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSDWSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLV
IQALNDLPTEGRRVSFDRFDIVVKKMIGPRIVLVRVYPKAPKEADE

Sequences:

>Translated_446_residues
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYLSACQLGITLASLGLGWIGEP
AFAALLSPVLALAGVESEKLVHLISLVFAFSVISFLHIVVGELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNT
SANAVLRLAGLSADHGGDAHYSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPVQYVKPDTPALDLFRRFRKGA
PHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSDWSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLV
IQALNDLPTEGRRVSFDRFDIVVKKMIGPRIVLVRVYPKAPKEADE
>Mature_446_residues
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYLSACQLGITLASLGLGWIGEP
AFAALLSPVLALAGVESEKLVHLISLVFAFSVISFLHIVVGELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNT
SANAVLRLAGLSADHGGDAHYSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPVQYVKPDTPALDLFRRFRKGA
PHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSDWSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLV
IQALNDLPTEGRRVSFDRFDIVVKKMIGPRIVLVRVYPKAPKEADE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=395, Percent_Identity=33.9240506329114, Blast_Score=239, Evalue=5e-63,
Organism=Escherichia coli, GI145693175, Length=433, Percent_Identity=20.7852193995381, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1790664, Length=430, Percent_Identity=23.7209302325581, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082033, Length=239, Percent_Identity=23.8493723849372, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786879, Length=246, Percent_Identity=25.2032520325203, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 48896; Mature: 48896

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYL
CEEHHHHHHHHHHHHHCCHHEEEHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SACQLGITLASLGLGWIGEPAFAALLSPVLALAGVESEKLVHLISLVFAFSVISFLHIVV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNTSANAVLRLAGLSADHGGDAH
HHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCC
YSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPV
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QYVKPDTPALDLFRRFRKGAPHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSD
HHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCH
WSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLVIQALNDLPTEGRRVSFDRFD
HHHCCCCEEEECCCCCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHHH
IVVKKMIGPRIVLVRVYPKAPKEADE
HHHHHHCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MIQIFALIGALLLVALNGFFVAAEFGLVKLRATRVKTLARQHGLRGRILRIVHARLDAYL
CEEHHHHHHHHHHHHHCCHHEEEHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SACQLGITLASLGLGWIGEPAFAALLSPVLALAGVESEKLVHLISLVFAFSVISFLHIVV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GELAPKSMAIRQAEKTGLWVALPLYAFYWAMYPAIWVLNTSANAVLRLAGLSADHGGDAH
HHCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCC
YSTDELKLILRSRRNAAGAAKAPKHAYSNDEWNTLAHSLDFSSMTVSDLMRPAHEMVGLR
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
RDLPLADNMEVVARHRFSRYPLFDDQSRETVNGLIHLKDLLLARHAGAALADLSDYVRPV
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QYVKPDTPALDLFRRFRKGAPHFALVGKKGEKPIGFLTLDNLLGALVGQIHDEFRQGDSD
HHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCH
WSRLDDGTLIGKGSLPVVSLEQALGIDIDEGRAESVGGLVIQALNDLPTEGRRVSFDRFD
HHHCCCCEEEECCCCCCEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHHH
IVVKKMIGPRIVLVRVYPKAPKEADE
HHHHHHCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]