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The map label for this gene is cpaF1 [C]

Identifier: 76818351

GI number: 76818351

Start: 1627518

End: 1628885

Strand: Direct

Name: cpaF1 [C]

Synonym: BURPS1710b_A1316

Alternate gene names: 76818351

Gene position: 1627518-1628885 (Clockwise)

Preceding gene: 76819415

Following gene: 76818607

Centisome position: 51.15

GC content: 67.18

Gene sequence:

>1368_bases
ATGTCATTGCGAGACCAGATGTCCGTGCGGCGCGCGCAACCGCTCATGTCCCGAAGCGACGCCATCGGCGCGGCCACCGC
GATGGCGCGCGAAGCGTATCAGAAGCTGCGCCGCCAGATGCACGGCGCGGTGCTCGAGCGCGTCGAGCTCGAACGCCTGT
CGCGGCTGCCCGCCGAACAGGTGCGCAACGAGATCGCGACGCTGATCGCGCGCATTCTCGACGAGGAGAAGCTGCTCGCG
AACGATCTCGAACGCCGCCAGTTGACGATCGACATCTACGACGAAATGTTCGGCTTCGGCCCGCTCGAATCGCTGCTGCG
CGACCCGAGCGTGTCGGACATCCTCGTCAACACGGCGAGCGCCGTCTACGTCGAGCGCTACGGCCGGCTCGAGCTGACCG
ACGTGACGTTCTACGACGACGCGCACCTGATGAAGGTGATCGAGAAGATCGTCTCGCGCGTCGGCCGGCGCATCGACGAA
TCGAGCCCGATGGTCGACGCGCGCCTGCCCGACGGCTCGCGCGTGAACGCGATCATCCCGCCGTCCGCGATCGACGGCCC
GCTGATGTCGATCCGCCGCTTCGCCGTCAATCCGCTGAAGATGGACGATCTCGTCAACTTCCAGACGCTGACGCCGCCGA
TGGCGCAACTGCTCGAGGCGCTCGCGCGCGCGAAGGTCAACGTGCTCGTGTCGGGCGGCACCGGCAGCGGCAAGACGACG
CTCCTGAACATCCTGTCGGGCTTCATTCCGGACGACGAACGGATCGTGACGATCGAGGACGCGGCGGAGCTGCAGCTTCA
ACAGCATCACGTGCTGCGGCTCGAGACGCGCCCGCCGAACATCGAGGGCAAGGGCGAGATCACGCAGCGCACGCTCGTGC
GCAACGCGCTGCGCATGCGGCCCGACCGCATCATCCTCGGCGAAGTGCGCGGCGCGGAGGCGCTCGACATGCTGAACGCG
ATGAACACCGGCCACGAAGGCTCGCTCGCGACGATCCACGCGAACACGCCGCGCGACGCGCTCACGCGGCTCGAGAACAT
GATCGGCGTCGCGGGCCTCGCGCTGCCGCCGAAAACGATGCGCCAGCAGATCAGCTCGGCGCTGTCCGTCGTCGTGCAGA
CCGCGCGGCTCACCGACGGCAAGCGCAAAATCGTCAGCATCCAGGAGCTGACCGGCATGGAGGGCGAGATCATCAACATG
CAGGAGATCTTCACGTTCAAGCGCACCGGCCTCGACGCGAGCGGCAACGTGCTCGGCTACTTCACCGCGACGGGCGTGCG
GCCGAAGTTCACCGAGCGCCTGACCGCGTTCGGCATCCAGTTGCCCGACGCGATGTACGACCCCGCGCGCCGCTTCGAAG
TGGCGTAA

Upstream 100 bases:

>100_bases
GCGCGACAGCGCGCGCGACGCGCCGCTCCTCGCCCGCTTCTTCAGCCGCGGCGCGGCCCCCAAACTCAAATCGATGTAAC
CCCCGTTCGAGGAGACCATC

Downstream 100 bases:

>100_bases
GCGCGCGACGCATGAAGGAGCTTGTCATGGATCCGATCTTCTACGGTTTCGTCCTGCTGCTGTTCGTCGCCGTGGTGCTG
GCGTTCGAAGGCGTCTATCA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSLRDQMSVRRAQPLMSRSDAIGAATAMAREAYQKLRRQMHGAVLERVELERLSRLPAEQVRNEIATLIARILDEEKLLA
NDLERRQLTIDIYDEMFGFGPLESLLRDPSVSDILVNTASAVYVERYGRLELTDVTFYDDAHLMKVIEKIVSRVGRRIDE
SSPMVDARLPDGSRVNAIIPPSAIDGPLMSIRRFAVNPLKMDDLVNFQTLTPPMAQLLEALARAKVNVLVSGGTGSGKTT
LLNILSGFIPDDERIVTIEDAAELQLQQHHVLRLETRPPNIEGKGEITQRTLVRNALRMRPDRIILGEVRGAEALDMLNA
MNTGHEGSLATIHANTPRDALTRLENMIGVAGLALPPKTMRQQISSALSVVVQTARLTDGKRKIVSIQELTGMEGEIINM
QEIFTFKRTGLDASGNVLGYFTATGVRPKFTERLTAFGIQLPDAMYDPARRFEVA

Sequences:

>Translated_455_residues
MSLRDQMSVRRAQPLMSRSDAIGAATAMAREAYQKLRRQMHGAVLERVELERLSRLPAEQVRNEIATLIARILDEEKLLA
NDLERRQLTIDIYDEMFGFGPLESLLRDPSVSDILVNTASAVYVERYGRLELTDVTFYDDAHLMKVIEKIVSRVGRRIDE
SSPMVDARLPDGSRVNAIIPPSAIDGPLMSIRRFAVNPLKMDDLVNFQTLTPPMAQLLEALARAKVNVLVSGGTGSGKTT
LLNILSGFIPDDERIVTIEDAAELQLQQHHVLRLETRPPNIEGKGEITQRTLVRNALRMRPDRIILGEVRGAEALDMLNA
MNTGHEGSLATIHANTPRDALTRLENMIGVAGLALPPKTMRQQISSALSVVVQTARLTDGKRKIVSIQELTGMEGEIINM
QEIFTFKRTGLDASGNVLGYFTATGVRPKFTERLTAFGIQLPDAMYDPARRFEVA
>Mature_454_residues
SLRDQMSVRRAQPLMSRSDAIGAATAMAREAYQKLRRQMHGAVLERVELERLSRLPAEQVRNEIATLIARILDEEKLLAN
DLERRQLTIDIYDEMFGFGPLESLLRDPSVSDILVNTASAVYVERYGRLELTDVTFYDDAHLMKVIEKIVSRVGRRIDES
SPMVDARLPDGSRVNAIIPPSAIDGPLMSIRRFAVNPLKMDDLVNFQTLTPPMAQLLEALARAKVNVLVSGGTGSGKTTL
LNILSGFIPDDERIVTIEDAAELQLQQHHVLRLETRPPNIEGKGEITQRTLVRNALRMRPDRIILGEVRGAEALDMLNAM
NTGHEGSLATIHANTPRDALTRLENMIGVAGLALPPKTMRQQISSALSVVVQTARLTDGKRKIVSIQELTGMEGEIINMQ
EIFTFKRTGLDASGNVLGYFTATGVRPKFTERLTAFGIQLPDAMYDPARRFEVA

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=189, Percent_Identity=30.1587301587302, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1789723, Length=267, Percent_Identity=28.8389513108614, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 50529; Mature: 50398

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRDQMSVRRAQPLMSRSDAIGAATAMAREAYQKLRRQMHGAVLERVELERLSRLPAEQ
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VRNEIATLIARILDEEKLLANDLERRQLTIDIYDEMFGFGPLESLLRDPSVSDILVNTAS
HHHHHHHHHHHHHCHHHHHHHHHHHHEEEEEEHHHHCCCCCHHHHHCCCCHHHHHHHHHH
AVYVERYGRLELTDVTFYDDAHLMKVIEKIVSRVGRRIDESSPMVDARLPDGSRVNAIIP
HHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEC
PSAIDGPLMSIRRFAVNPLKMDDLVNFQTLTPPMAQLLEALARAKVNVLVSGGTGSGKTT
CCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHH
LLNILSGFIPDDERIVTIEDAAELQLQQHHVLRLETRPPNIEGKGEITQRTLVRNALRMR
HHHHHHHCCCCCCEEEEECCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
PDRIILGEVRGAEALDMLNAMNTGHEGSLATIHANTPRDALTRLENMIGVAGLALPPKTM
CCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHH
RQQISSALSVVVQTARLTDGKRKIVSIQELTGMEGEIINMQEIFTFKRTGLDASGNVLGY
HHHHHHHHHHHHHHHHCCCCHHHEEEHHHHCCCCCCEECHHHHHHHHHCCCCCCCCEEEE
FTATGVRPKFTERLTAFGIQLPDAMYDPARRFEVA
EEECCCCHHHHHHHHHHCCCCCHHHCCCHHHCCCC
>Mature Secondary Structure 
SLRDQMSVRRAQPLMSRSDAIGAATAMAREAYQKLRRQMHGAVLERVELERLSRLPAEQ
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VRNEIATLIARILDEEKLLANDLERRQLTIDIYDEMFGFGPLESLLRDPSVSDILVNTAS
HHHHHHHHHHHHHCHHHHHHHHHHHHEEEEEEHHHHCCCCCHHHHHCCCCHHHHHHHHHH
AVYVERYGRLELTDVTFYDDAHLMKVIEKIVSRVGRRIDESSPMVDARLPDGSRVNAIIP
HHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEC
PSAIDGPLMSIRRFAVNPLKMDDLVNFQTLTPPMAQLLEALARAKVNVLVSGGTGSGKTT
CCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHH
LLNILSGFIPDDERIVTIEDAAELQLQQHHVLRLETRPPNIEGKGEITQRTLVRNALRMR
HHHHHHHCCCCCCEEEEECCHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
PDRIILGEVRGAEALDMLNAMNTGHEGSLATIHANTPRDALTRLENMIGVAGLALPPKTM
CCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHH
RQQISSALSVVVQTARLTDGKRKIVSIQELTGMEGEIINMQEIFTFKRTGLDASGNVLGY
HHHHHHHHHHHHHHHHCCCCHHHEEEHHHHCCCCCCEECHHHHHHHHHCCCCCCCCEEEE
FTATGVRPKFTERLTAFGIQLPDAMYDPARRFEVA
EEECCCCHHHHHHHHHHCCCCCHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]