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The map label for this gene is rfbH [H]

Identifier: 76818298

GI number: 76818298

Start: 2401516

End: 2402748

Strand: Direct

Name: rfbH [H]

Synonym: BURPS1710b_A1963

Alternate gene names: 76818298

Gene position: 2401516-2402748 (Clockwise)

Preceding gene: 76819797

Following gene: 76819049

Centisome position: 75.48

GC content: 66.42

Gene sequence:

>1233_bases
GTGCCGGGCCGCACGCCCGTGCCCGTGTCCGGCAAGGTGATCGGCGCGCCGGAACTGCAGCACATGGTGGATGCGAGCCT
CGACGGCTGGCTGACGACGGGGCGCTTCAACACGGCCTTCGAGAACAGGCTCGCGCGCTATCTGGGCGTGACGCACGTGA
TCACGGTGAACTCCGGTTCGTCGGCGAATCTCGTCGCGTTCTCGACGCTGACCTCCGATCGCCTCGGCGAGCGGGCGATC
CGCCCCGGCGACGAAGTGATCGGCGTGGCCGCGGGATTCCCGACGACGGTCAATCCGATCCTTCAATTCGGCGCGGTGCC
CGTGTTCGTCGACATCGAACTCGGCACGTACAACGTCGACGCGACGAAGCTCGAAGCGGCGATCTCGCCGCGGACCCGGG
CGATCATGCTCGCACACTGCCTCGGCAACCCGTTCAACGTCGAGGCCGTGACCTCGCTGTGCCGCAAGTACGGGCTCTGG
CTGATCGAGGACTGCTGCGACGCGCTGGGAGCGCGGTACGACGGGCGACTCGTCGGCACGTTCGGCGACATCGCGACGCT
GAGTTTCTACCCGGCGCACCACATCACGATGGGCGAGGGCGGCGCGGTGTTCACCAATAACGACGAGCTCGCGCGCATCG
CCGAATCGTTCCGCGACTGGGGCCGGGATTGCTACTGCGCGCCGGGTGCCGACAACACCTGCGGCAAGCGCTTCTGCTGG
CAGCTCGGCGAGCTGCCGCGCGGCTACGACCACAAGTACACGTACAGCCACTGCGGCTACAACCTGAAGATCACCGACAT
GCAGGCCGCTTGCGCGCTCGCGCAGATGGATCGCGTCGACGGCTTCATCGAGCGGCGCCGCGGCAACTTCGCCTACCTGA
AGGAGCGGCTGTCGTCATGCGATGCGTTCCTGCATCTGCCGCAGGCGACATTCAATTCGAATCCTTCGTGGTTCGGCTTC
CCGCTGACGCTGAGGGAGGACACGGGCGTCGCGCGGGTCGATTTGCTCGATTACCTGAGCCAGGGCGGCGTCGGCACGCG
CCTGCTGTTCGCGGGCAACCTGACGCGCCAGCCGTACATGCGGCATCGGCGGTATCGCGTGAGCGGCGAGCTGGCGGTCA
CGGACGCCGTGATGGAGCGCACGTTCTGGATCGGCGTCTTTCCGGGGCTGGACGAAGCGATGCTCGATTACGCGTGCACG
AAGATCGAGACGTTCCTGGGCATCAACTTTTGA

Upstream 100 bases:

>100_bases
GTTCGCGCCGGACGCCGCGCGAAGCCCGGACGCCATCCGCGCGGAAATCGCCGCGCTGGTTCGAGAGTATGCGAACGCGA
CGCAGGCGCGCGCTCCGTTC

Downstream 100 bases:

>100_bases
GGGAGTTGCCGTGGCTACTACCGCAGTGAACGTATACAAGAAGGCGCTCGTGGCGAATTTCCGCTTTCTCAAAGCGTCGC
GCGACGTCCGGGAAGCGTAC

Product: CDP-6deoxy-D-xylo-4-hexulose-3-dehydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MPGRTPVPVSGKVIGAPELQHMVDASLDGWLTTGRFNTAFENRLARYLGVTHVITVNSGSSANLVAFSTLTSDRLGERAI
RPGDEVIGVAAGFPTTVNPILQFGAVPVFVDIELGTYNVDATKLEAAISPRTRAIMLAHCLGNPFNVEAVTSLCRKYGLW
LIEDCCDALGARYDGRLVGTFGDIATLSFYPAHHITMGEGGAVFTNNDELARIAESFRDWGRDCYCAPGADNTCGKRFCW
QLGELPRGYDHKYTYSHCGYNLKITDMQAACALAQMDRVDGFIERRRGNFAYLKERLSSCDAFLHLPQATFNSNPSWFGF
PLTLREDTGVARVDLLDYLSQGGVGTRLLFAGNLTRQPYMRHRRYRVSGELAVTDAVMERTFWIGVFPGLDEAMLDYACT
KIETFLGINF

Sequences:

>Translated_410_residues
MPGRTPVPVSGKVIGAPELQHMVDASLDGWLTTGRFNTAFENRLARYLGVTHVITVNSGSSANLVAFSTLTSDRLGERAI
RPGDEVIGVAAGFPTTVNPILQFGAVPVFVDIELGTYNVDATKLEAAISPRTRAIMLAHCLGNPFNVEAVTSLCRKYGLW
LIEDCCDALGARYDGRLVGTFGDIATLSFYPAHHITMGEGGAVFTNNDELARIAESFRDWGRDCYCAPGADNTCGKRFCW
QLGELPRGYDHKYTYSHCGYNLKITDMQAACALAQMDRVDGFIERRRGNFAYLKERLSSCDAFLHLPQATFNSNPSWFGF
PLTLREDTGVARVDLLDYLSQGGVGTRLLFAGNLTRQPYMRHRRYRVSGELAVTDAVMERTFWIGVFPGLDEAMLDYACT
KIETFLGINF
>Mature_409_residues
PGRTPVPVSGKVIGAPELQHMVDASLDGWLTTGRFNTAFENRLARYLGVTHVITVNSGSSANLVAFSTLTSDRLGERAIR
PGDEVIGVAAGFPTTVNPILQFGAVPVFVDIELGTYNVDATKLEAAISPRTRAIMLAHCLGNPFNVEAVTSLCRKYGLWL
IEDCCDALGARYDGRLVGTFGDIATLSFYPAHHITMGEGGAVFTNNDELARIAESFRDWGRDCYCAPGADNTCGKRFCWQ
LGELPRGYDHKYTYSHCGYNLKITDMQAACALAQMDRVDGFIERRRGNFAYLKERLSSCDAFLHLPQATFNSNPSWFGFP
LTLREDTGVARVDLLDYLSQGGVGTRLLFAGNLTRQPYMRHRRYRVSGELAVTDAVMERTFWIGVFPGLDEAMLDYACTK
IETFLGINF

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=404, Percent_Identity=30.9405940594059, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI2367285, Length=282, Percent_Identity=29.7872340425532, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 45242; Mature: 45111

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRTPVPVSGKVIGAPELQHMVDASLDGWLTTGRFNTAFENRLARYLGVTHVITVNSGS
CCCCCCCCCCCEEECCHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHCEEEEEEECCCC
SANLVAFSTLTSDRLGERAIRPGDEVIGVAAGFPTTVNPILQFGAVPVFVDIELGTYNVD
CCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCEEEEEEEEECEEECC
ATKLEAAISPRTRAIMLAHCLGNPFNVEAVTSLCRKYGLWLIEDCCDALGARYDGRLVGT
HHHHHHHCCCCHHHEEEEHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEC
FGDIATLSFYPAHHITMGEGGAVFTNNDELARIAESFRDWGRDCYCAPGADNTCGKRFCW
CCCEEEEEECCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHH
QLGELPRGYDHKYTYSHCGYNLKITDMQAACALAQMDRVDGFIERRRGNFAYLKERLSSC
HHHCCCCCCCCCEEHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DAFLHLPQATFNSNPSWFGFPLTLREDTGVARVDLLDYLSQGGVGTRLLFAGNLTRQPYM
HHHEECCCHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
RHRRYRVSGELAVTDAVMERTFWIGVFPGLDEAMLDYACTKIETFLGINF
HHHHEEECCCEEHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PGRTPVPVSGKVIGAPELQHMVDASLDGWLTTGRFNTAFENRLARYLGVTHVITVNSGS
CCCCCCCCCCEEECCHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHCEEEEEEECCCC
SANLVAFSTLTSDRLGERAIRPGDEVIGVAAGFPTTVNPILQFGAVPVFVDIELGTYNVD
CCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCEEEEEEEEECEEECC
ATKLEAAISPRTRAIMLAHCLGNPFNVEAVTSLCRKYGLWLIEDCCDALGARYDGRLVGT
HHHHHHHCCCCHHHEEEEHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEC
FGDIATLSFYPAHHITMGEGGAVFTNNDELARIAESFRDWGRDCYCAPGADNTCGKRFCW
CCCEEEEEECCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHH
QLGELPRGYDHKYTYSHCGYNLKITDMQAACALAQMDRVDGFIERRRGNFAYLKERLSSC
HHHCCCCCCCCCEEHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DAFLHLPQATFNSNPSWFGFPLTLREDTGVARVDLLDYLSQGGVGTRLLFAGNLTRQPYM
HHHEECCCHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
RHRRYRVSGELAVTDAVMERTFWIGVFPGLDEAMLDYACTKIETFLGINF
HHHHEEECCCEEHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]