| Definition | Burkholderia pseudomallei 1710b chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_007435 |
| Length | 3,181,762 |
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The map label for this gene is kpsD [H]
Identifier: 76817935
GI number: 76817935
Start: 2395690
End: 2398317
Strand: Direct
Name: kpsD [H]
Synonym: BURPS1710b_A1959
Alternate gene names: 76817935
Gene position: 2395690-2398317 (Clockwise)
Preceding gene: 76817456
Following gene: 76818741
Centisome position: 75.29
GC content: 68.38
Gene sequence:
>2628_bases ATGATTCGGCGTCGGCGCGCCGACGATGTGTTGCAGAAAGCGAGATGTTCAATTGACCGAAAGACAAGAAGCCGAATGAA CGTCAAGAGCCCTATTCTCCGGCACCCGCGTACATGGGCTGGTTTTTCGTTCCGCGATGGTCTGCCGTTCATTCGTTTCG CCTCCCTGCGTTTGCTCGCGTGGCTGCTTCGCTGCGCCGTGTGTTTGTGGCCGTGCGCGTTCCCTGTGTTCGCGCATGCG CAAATCGTCCCTTTCGTTCCGTCTGCATCCGCCGGCGCGGACGCGCGTTCGGCGGTGCCGCTGCCGCCGATCGACAGCCT GCCGGCGGCGGACGGCCTGAGCGCGCGGCAACGCGACGCGCTTCAGCCGCCGCTGCCGGGCGCGAAGCTGACGAAGGACG CCACGACGAAAGACGGCCTGTTGAAGGACGGCGCCGCGCTGAATGAGCCGCCGCGCCCCTGCGGGCCGCTCGGATGTCGT GGCGAAGCGATCGATTGCCCGCCGTCGGCCGACGGCCGGCCGACGTCCATTACGCGCCGGGCGGACGGCACGCCCGAATT GCCGGATCCGTGCGGGCGGCCGCGCGCCGCTTCGCAACCGGCGCTGACCGATTTTCAGGTCTTCGTGCAGCAGAGCACGG GCCGCGCGTTGCCGCTGTTCGGCTACAACTTCTTTTCGACGACGACGACCTACCGGTCGCTCGACAACGTTCCGGTTCCC GACGATTACGTGCTCGGCCCCGGCGACGAAGTGCTGCTGCACGCGTGGGGCGGCGTCGCGGGCGATCAGCGCCTCGTCGT CGACCGCAACGGTCAGGTGAGCATTCCGGGCGTCGGTGTCGTGACGGTGGCGGGCGCGCGCGCGTCCGAGCTCGATTCGC TGCTGCGCGGCGGGCTTGGCCGATATTTCACGGATTTCAACGTGAATGCGGCGCTCGGGCGTCTGCGATCGATCCCGGTG TATGTCGTCGGCAAGGCGATGTCGCCCGGCAGCTACACGGTGCCCGGCACGTCGACGATCATCGGCGCGTTGTTCGCGAG CGGCGGCCCCGCGTTCAACGGCTCGATGCGCGCGGTGGCGCTGTATCGCAATGGCCGGCAGATCGCCGCGCTCGACGTCT ACGGCTTTCTCACGCGCGGCGCGGTGAAGGACGATGTCCATCTGCTGCCGGGCGACGTCATCGTCATTCCGCCCGCCGGG CCGCGCATCGCGCTGACGGGCGCGCTCGACGCGCCCGGCATCTACGAGCTGCGCAAGACGAGCGAAACGTTGCGCGAGCT GCTCGACGACGCGGGCGGCGTCACCGCGCTCACGAGCCTCGACCGCGTGATGATCGAACGGGTGAACCCGGCCGACGGCG CCGCGCCGCGTTCCGTGCAGGAAGTGCGGCTCGACGAAGCGGGGCTCGCGACGGTCGTGAAGGACGGCGACATCGTGACG CTGTCGATGGTGTCGCAGAAATTCTCGAACGCCGTGACGCTGCGCGGCAACGTCGCCGCGGCGCTCAGGTATCCGTACAA ACCGGGCATGACGCTCGCCGATTTGCTGCCGTCCCCGGAGGCCGTGCTGACGCCCGACTACTTCACGCGCAAGAACATTC TCGTCGAATACGCGAAGAGCGGCGGCGCCGACCGGCGGCCGTTCGACGGCATCCGCAATCTCGTCGACGAGCCCAACTGG CACTACGCGATCATTCAGCGGCTCGACCCCGTCACGCTGACCGAGAACGTGATCGCGTTCAACCTGCGCGCGGTGATGAC GAAAGGCAGCGCCGAGGCCGGCATCGCGCTGCAGCCCGGCGACGTGGTGACGATTTTCGGCAAGCGGGACCTGCGCAACC CGGTCGACGACAACAAGAGCCTCGTTCGCGTGGACGGCGAAGTGCGCGCACCCGGCGTCTACCAGCTCAACGCGGGCGAA TCGCTGCGCGAGCTGCTGCAGCGCGCGGGCGGCCTGACAAGCAACGCGTATGTGTTCGGCCTCGAATTCACGCGCGAATC CACCCGCAGCCAGCAGCAGCAGAACCTGAACGCCGCGCTCGACCGCGCGACGTTGCAGGCGAACAGCAAGCTCGCCGCGG CGCTCGCGAACCTGCCGAGCGGCGACACGCAGTATCTGCAGGCTCAGATGGCGGCCGCGCAGCAGGCGCAACTCGCGCGG CTGCGCGAGCTCAAGCCGACGGGGCGCGTGTCGCTCGAGCTGAGCACGCGCGCGAGCCGCATCGGCGATCTGCCCGATCT GCCGCTGAACGACGGCGATGCGATTTACGTGCCGCCGGTGCCGGCGTTCGTGACCGTCTACGGCGCGGTCGACAATCAGA ACGCGGTGATCTGGAAGCTGCATCGAACGGTCGCCGATACGTTGAGGGTCGCGGGCGTCCAGCGGGACATCGCGGACCTC GACGCCGCATTCGTGCTGCGCGCCGACGGCAGCGTCGCGTCGGCGAGCAGCGCCGGCTGGTTCGGCAGCTTCGGCGCGCT CGAGCTGATGCCGGGCGACGCGCTCGTGGTTCCCGAGAAGCTCGACCGGCGCACCGCGATGACGAAGTTCCTCGCCGGCC TCAAGGACTGGTCGCAGGTGCTGGCCAATTTCGGCCTGGGCGCGGCGGCAATCAAGGTGCTCAAGTAA
Upstream 100 bases:
>100_bases CCGGGCGGCAATGGCCGGACGTCTGCTCCATCGCGCGGTTGTGACGTAAGGGGCGGCTACGGGGCGCTCGCCGAGGGCGC GTTCGCATAGCGCGACGCCG
Downstream 100 bases:
>100_bases AGCGATGGCTGAACTCGAAACCGGTGGCGACGGGCCGGCTGACGTCGGGCAGAGCGCACCCGTCGGCCCGGCGCTCAGCC GCGCCGACGTGCTGATCGCG
Product: capsule polysaccharide export system periplasmic protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 875; Mature: 875
Protein sequence:
>875_residues MIRRRRADDVLQKARCSIDRKTRSRMNVKSPILRHPRTWAGFSFRDGLPFIRFASLRLLAWLLRCAVCLWPCAFPVFAHA QIVPFVPSASAGADARSAVPLPPIDSLPAADGLSARQRDALQPPLPGAKLTKDATTKDGLLKDGAALNEPPRPCGPLGCR GEAIDCPPSADGRPTSITRRADGTPELPDPCGRPRAASQPALTDFQVFVQQSTGRALPLFGYNFFSTTTTYRSLDNVPVP DDYVLGPGDEVLLHAWGGVAGDQRLVVDRNGQVSIPGVGVVTVAGARASELDSLLRGGLGRYFTDFNVNAALGRLRSIPV YVVGKAMSPGSYTVPGTSTIIGALFASGGPAFNGSMRAVALYRNGRQIAALDVYGFLTRGAVKDDVHLLPGDVIVIPPAG PRIALTGALDAPGIYELRKTSETLRELLDDAGGVTALTSLDRVMIERVNPADGAAPRSVQEVRLDEAGLATVVKDGDIVT LSMVSQKFSNAVTLRGNVAAALRYPYKPGMTLADLLPSPEAVLTPDYFTRKNILVEYAKSGGADRRPFDGIRNLVDEPNW HYAIIQRLDPVTLTENVIAFNLRAVMTKGSAEAGIALQPGDVVTIFGKRDLRNPVDDNKSLVRVDGEVRAPGVYQLNAGE SLRELLQRAGGLTSNAYVFGLEFTRESTRSQQQQNLNAALDRATLQANSKLAAALANLPSGDTQYLQAQMAAAQQAQLAR LRELKPTGRVSLELSTRASRIGDLPDLPLNDGDAIYVPPVPAFVTVYGAVDNQNAVIWKLHRTVADTLRVAGVQRDIADL DAAFVLRADGSVASASSAGWFGSFGALELMPGDALVVPEKLDRRTAMTKFLAGLKDWSQVLANFGLGAAAIKVLK
Sequences:
>Translated_875_residues MIRRRRADDVLQKARCSIDRKTRSRMNVKSPILRHPRTWAGFSFRDGLPFIRFASLRLLAWLLRCAVCLWPCAFPVFAHA QIVPFVPSASAGADARSAVPLPPIDSLPAADGLSARQRDALQPPLPGAKLTKDATTKDGLLKDGAALNEPPRPCGPLGCR GEAIDCPPSADGRPTSITRRADGTPELPDPCGRPRAASQPALTDFQVFVQQSTGRALPLFGYNFFSTTTTYRSLDNVPVP DDYVLGPGDEVLLHAWGGVAGDQRLVVDRNGQVSIPGVGVVTVAGARASELDSLLRGGLGRYFTDFNVNAALGRLRSIPV YVVGKAMSPGSYTVPGTSTIIGALFASGGPAFNGSMRAVALYRNGRQIAALDVYGFLTRGAVKDDVHLLPGDVIVIPPAG PRIALTGALDAPGIYELRKTSETLRELLDDAGGVTALTSLDRVMIERVNPADGAAPRSVQEVRLDEAGLATVVKDGDIVT LSMVSQKFSNAVTLRGNVAAALRYPYKPGMTLADLLPSPEAVLTPDYFTRKNILVEYAKSGGADRRPFDGIRNLVDEPNW HYAIIQRLDPVTLTENVIAFNLRAVMTKGSAEAGIALQPGDVVTIFGKRDLRNPVDDNKSLVRVDGEVRAPGVYQLNAGE SLRELLQRAGGLTSNAYVFGLEFTRESTRSQQQQNLNAALDRATLQANSKLAAALANLPSGDTQYLQAQMAAAQQAQLAR LRELKPTGRVSLELSTRASRIGDLPDLPLNDGDAIYVPPVPAFVTVYGAVDNQNAVIWKLHRTVADTLRVAGVQRDIADL DAAFVLRADGSVASASSAGWFGSFGALELMPGDALVVPEKLDRRTAMTKFLAGLKDWSQVLANFGLGAAAIKVLK >Mature_875_residues MIRRRRADDVLQKARCSIDRKTRSRMNVKSPILRHPRTWAGFSFRDGLPFIRFASLRLLAWLLRCAVCLWPCAFPVFAHA QIVPFVPSASAGADARSAVPLPPIDSLPAADGLSARQRDALQPPLPGAKLTKDATTKDGLLKDGAALNEPPRPCGPLGCR GEAIDCPPSADGRPTSITRRADGTPELPDPCGRPRAASQPALTDFQVFVQQSTGRALPLFGYNFFSTTTTYRSLDNVPVP DDYVLGPGDEVLLHAWGGVAGDQRLVVDRNGQVSIPGVGVVTVAGARASELDSLLRGGLGRYFTDFNVNAALGRLRSIPV YVVGKAMSPGSYTVPGTSTIIGALFASGGPAFNGSMRAVALYRNGRQIAALDVYGFLTRGAVKDDVHLLPGDVIVIPPAG PRIALTGALDAPGIYELRKTSETLRELLDDAGGVTALTSLDRVMIERVNPADGAAPRSVQEVRLDEAGLATVVKDGDIVT LSMVSQKFSNAVTLRGNVAAALRYPYKPGMTLADLLPSPEAVLTPDYFTRKNILVEYAKSGGADRRPFDGIRNLVDEPNW HYAIIQRLDPVTLTENVIAFNLRAVMTKGSAEAGIALQPGDVVTIFGKRDLRNPVDDNKSLVRVDGEVRAPGVYQLNAGE SLRELLQRAGGLTSNAYVFGLEFTRESTRSQQQQNLNAALDRATLQANSKLAAALANLPSGDTQYLQAQMAAAQQAQLAR LRELKPTGRVSLELSTRASRIGDLPDLPLNDGDAIYVPPVPAFVTVYGAVDNQNAVIWKLHRTVADTLRVAGVQRDIADL DAAFVLRADGSVASASSAGWFGSFGALELMPGDALVVPEKLDRRTAMTKFLAGLKDWSQVLANFGLGAAAIKVLK
Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli K5 kpsD [H]
Homologues:
Organism=Escherichia coli, GI1788376, Length=210, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 [H]
Pfam domain/function: PF02563 Poly_export [H]
EC number: NA
Molecular weight: Translated: 93567; Mature: 93567
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRRRRADDVLQKARCSIDRKTRSRMNVKSPILRHPRTWAGFSFRDGLPFIRFASLRLLA CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH WLLRCAVCLWPCAFPVFAHAQIVPFVPSASAGADARSAVPLPPIDSLPAADGLSARQRDA HHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC LQPPLPGAKLTKDATTKDGLLKDGAALNEPPRPCGPLGCRGEAIDCPPSADGRPTSITRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC ADGTPELPDPCGRPRAASQPALTDFQVFVQQSTGRALPLFGYNFFSTTTTYRSLDNVPVP CCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHCCCCCCC DDYVLGPGDEVLLHAWGGVAGDQRLVVDRNGQVSIPGVGVVTVAGARASELDSLLRGGLG CCEEECCCCCEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCHHHHHHHHHCCHH RYFTDFNVNAALGRLRSIPVYVVGKAMSPGSYTVPGTSTIIGALFASGGPAFNGSMRAVA HHEECCCCHHHHHHHHCCCEEEEEEECCCCCEECCCHHHHHHHHHHCCCCCCCCCEEEEE LYRNGRQIAALDVYGFLTRGAVKDDVHLLPGDVIVIPPAGPRIALTGALDAPGIYELRKT EEECCCEEEEEEHHHHHHCCCCCCCCEECCCCEEEECCCCCEEEEEECCCCCCHHHHHHH SETLRELLDDAGGVTALTSLDRVMIERVNPADGAAPRSVQEVRLDEAGLATVVKDGDIVT HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCEEE LSMVSQKFSNAVTLRGNVAAALRYPYKPGMTLADLLPSPEAVLTPDYFTRKNILVEYAKS HHHHHHHHCCEEEEECCEEEEEECCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHC GGADRRPFDGIRNLVDEPNWHYAIIQRLDPVTLTENVIAFNLRAVMTKGSAEAGIALQPG CCCCCCCHHHHHHHHCCCCCEEEEEHHCCCCEEECCCCEEEEEEEEECCCCCCCEEECCC DVVTIFGKRDLRNPVDDNKSLVRVDGEVRAPGVYQLNAGESLRELLQRAGGLTSNAYVFG CEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEEE LEFTRESTRSQQQQNLNAALDRATLQANSKLAAALANLPSGDTQYLQAQMAAAQQAQLAR EEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LRELKPTGRVSLELSTRASRIGDLPDLPLNDGDAIYVPPVPAFVTVYGAVDNQNAVIWKL HHHCCCCCEEEEEECHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCEEEEE HRTVADTLRVAGVQRDIADLDAAFVLRADGSVASASSAGWFGSFGALELMPGDALVVPEK HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCEEECCHH LDRRTAMTKFLAGLKDWSQVLANFGLGAAAIKVLK HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECC >Mature Secondary Structure MIRRRRADDVLQKARCSIDRKTRSRMNVKSPILRHPRTWAGFSFRDGLPFIRFASLRLLA CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH WLLRCAVCLWPCAFPVFAHAQIVPFVPSASAGADARSAVPLPPIDSLPAADGLSARQRDA HHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC LQPPLPGAKLTKDATTKDGLLKDGAALNEPPRPCGPLGCRGEAIDCPPSADGRPTSITRR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC ADGTPELPDPCGRPRAASQPALTDFQVFVQQSTGRALPLFGYNFFSTTTTYRSLDNVPVP CCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHCCCCCCC DDYVLGPGDEVLLHAWGGVAGDQRLVVDRNGQVSIPGVGVVTVAGARASELDSLLRGGLG CCEEECCCCCEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCHHHHHHHHHCCHH RYFTDFNVNAALGRLRSIPVYVVGKAMSPGSYTVPGTSTIIGALFASGGPAFNGSMRAVA HHEECCCCHHHHHHHHCCCEEEEEEECCCCCEECCCHHHHHHHHHHCCCCCCCCCEEEEE LYRNGRQIAALDVYGFLTRGAVKDDVHLLPGDVIVIPPAGPRIALTGALDAPGIYELRKT EEECCCEEEEEEHHHHHHCCCCCCCCEECCCCEEEECCCCCEEEEEECCCCCCHHHHHHH SETLRELLDDAGGVTALTSLDRVMIERVNPADGAAPRSVQEVRLDEAGLATVVKDGDIVT HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEEECCCEEE LSMVSQKFSNAVTLRGNVAAALRYPYKPGMTLADLLPSPEAVLTPDYFTRKNILVEYAKS HHHHHHHHCCEEEEECCEEEEEECCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHC GGADRRPFDGIRNLVDEPNWHYAIIQRLDPVTLTENVIAFNLRAVMTKGSAEAGIALQPG CCCCCCCHHHHHHHHCCCCCEEEEEHHCCCCEEECCCCEEEEEEEEECCCCCCCEEECCC DVVTIFGKRDLRNPVDDNKSLVRVDGEVRAPGVYQLNAGESLRELLQRAGGLTSNAYVFG CEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEEE LEFTRESTRSQQQQNLNAALDRATLQANSKLAAALANLPSGDTQYLQAQMAAAQQAQLAR EEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH LRELKPTGRVSLELSTRASRIGDLPDLPLNDGDAIYVPPVPAFVTVYGAVDNQNAVIWKL HHHCCCCCEEEEEECHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCEEEEE HRTVADTLRVAGVQRDIADLDAAFVLRADGSVASASSAGWFGSFGALELMPGDALVVPEK HHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCEEECCHH LDRRTAMTKFLAGLKDWSQVLANFGLGAAAIKVLK HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8021185 [H]