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The map label for this gene is ygbK [C]

Identifier: 76817602

GI number: 76817602

Start: 608351

End: 609718

Strand: Direct

Name: ygbK [C]

Synonym: BURPS1710b_A0439

Alternate gene names: 76817602

Gene position: 608351-609718 (Clockwise)

Preceding gene: 76818839

Following gene: 76819657

Centisome position: 19.12

GC content: 72.3

Gene sequence:

>1368_bases
ATGAGCACCGATCAAGCCCTTCGCCCCCTGCTCGGCTGCATCGCCGACGATTTCACCGGCGCGACCGATCTCGCGAACAT
GCTGGTCAAGAGCGGCATGCGCACCGTGCAGACGATCGGTGTGCCCGCCGCCGGCGCGGCCGTGCCAGCCGATGCGATCG
TCGTCGCGCTGAAGTCGCGCACGATCCCGGCCGCCGACGCGGTCGCGCAATCGCTCGCCGCGCTCGACTGGCTGCGCGCG
CAGGGCTGCCGCCAGTTCTTCTTCAAATACTGCTCGACGTTCGATTCGACCGACGCGGGCAACATCGGCCCCGTCGCCGA
TGCGCTGCTCGACGCGCTCGGCGGCGAGCGCGCGTTCACGATCGCGTGCCCCGCGTTCCCCGAGAACGGCCGAACCGTCT
ATCGCGGCCACCTGTTCGTCGGCGACGCGCTGCTCGGCGAATCCGGGATGGAGAATCATCCGCTCACGCCGATGAAGGAC
GCGAATCTCGTGCGCGTGCTGCAGCGGCAAACGCCGTCGAAAGTCGGGCTGATCCGCCACGACGCGATCGCGCTCGGCAC
CTGCGCCGTGCGCGAGACGATCGACACGCTGCGCCGCGAGGGCGTCCGCATCGCGATCGCGGACGCGCTGACCGACCGCG
ATCTGTACGTGCTCGGCGAGGCATGCGCGGACTTGCCGCTGATCACGGGCGGCTCGGGCGTCGCGCTCGGGCTGCCGTCG
AATTTCCGGCTCGGCGGGCTGTTGCCCGAGCGCGGCGACGCGGCGGCGTTGCCCGCGATCGGCGGCGCGTCGGCGGTGCT
CGCCGGCAGCGCATCGAAGGCGACCCACGCGCAGGTCGCCGCGTGGCGCGCCGAGCGCCCCGCGTTGCGCATCGATCCGT
TCGCGGCCGCGCGCGGCGAGCCCGTCGTCGACCAGGCGCTCGCGTTCGCGCGCGCGCATCTGCCGCAGCCGGTGCTGATC
TACGCGAGCGCCGCGCCCGACGAAGTGAAGCAGGTGCAGCAGGCGCTCGGCATCGAAGCCGCCGGCCATCTCGTCGAGGC
GACGCTCGCCGCGATCGCGCGCGGGCTGCGCGAGATGGGCGTGCGCAAGTTCGTCGTCGCGGGCGGCGAAACTTCCGGCG
CGGTCGTGCAGGCGCTCGGCGTGAAAGCGCTGCGGATCGGCGCGCAGATCGACCCCGGCGTGCCCGCCACCGCGACGACC
GAAGGAAGTCCCTGTGGGACGACCGAAGGAAGCCCCTGTGGGGCGACCGAAGGAAGCCCCCGCGGGACGCCCGACGCGCA
GCCGCTCGGCCTCGCGCTGAAGTCCGGCAATTTCGGCTCGGTCGACTTCTTCGAGAAGGCGCTGCGCGCGCTGGAGGGCG
CCGCATGA

Upstream 100 bases:

>100_bases
AGCGCGGGCCACGGCGGCGAGGACGACTCGGCCGTCATCAAGACGTTCCCCGGCATCGCGCTGCCGGCGCGCCGCTGATT
CACCGGAGTTGCCTGCCTCC

Downstream 100 bases:

>100_bases
GCCCCATCGAGACGAAACTGCGCGAGGAGATCTGCGAGATCGGCGCGAGCCTGTACGCGCGCGGCCACGCGGTCGGCAGC
GCGGGCAACATCAGCGCGAA

Product: type III effector Hop protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSTDQALRPLLGCIADDFTGATDLANMLVKSGMRTVQTIGVPAAGAAVPADAIVVALKSRTIPAADAVAQSLAALDWLRA
QGCRQFFFKYCSTFDSTDAGNIGPVADALLDALGGERAFTIACPAFPENGRTVYRGHLFVGDALLGESGMENHPLTPMKD
ANLVRVLQRQTPSKVGLIRHDAIALGTCAVRETIDTLRREGVRIAIADALTDRDLYVLGEACADLPLITGGSGVALGLPS
NFRLGGLLPERGDAAALPAIGGASAVLAGSASKATHAQVAAWRAERPALRIDPFAAARGEPVVDQALAFARAHLPQPVLI
YASAAPDEVKQVQQALGIEAAGHLVEATLAAIARGLREMGVRKFVVAGGETSGAVVQALGVKALRIGAQIDPGVPATATT
EGSPCGTTEGSPCGATEGSPRGTPDAQPLGLALKSGNFGSVDFFEKALRALEGAA

Sequences:

>Translated_455_residues
MSTDQALRPLLGCIADDFTGATDLANMLVKSGMRTVQTIGVPAAGAAVPADAIVVALKSRTIPAADAVAQSLAALDWLRA
QGCRQFFFKYCSTFDSTDAGNIGPVADALLDALGGERAFTIACPAFPENGRTVYRGHLFVGDALLGESGMENHPLTPMKD
ANLVRVLQRQTPSKVGLIRHDAIALGTCAVRETIDTLRREGVRIAIADALTDRDLYVLGEACADLPLITGGSGVALGLPS
NFRLGGLLPERGDAAALPAIGGASAVLAGSASKATHAQVAAWRAERPALRIDPFAAARGEPVVDQALAFARAHLPQPVLI
YASAAPDEVKQVQQALGIEAAGHLVEATLAAIARGLREMGVRKFVVAGGETSGAVVQALGVKALRIGAQIDPGVPATATT
EGSPCGTTEGSPCGATEGSPRGTPDAQPLGLALKSGNFGSVDFFEKALRALEGAA
>Mature_454_residues
STDQALRPLLGCIADDFTGATDLANMLVKSGMRTVQTIGVPAAGAAVPADAIVVALKSRTIPAADAVAQSLAALDWLRAQ
GCRQFFFKYCSTFDSTDAGNIGPVADALLDALGGERAFTIACPAFPENGRTVYRGHLFVGDALLGESGMENHPLTPMKDA
NLVRVLQRQTPSKVGLIRHDAIALGTCAVRETIDTLRREGVRIAIADALTDRDLYVLGEACADLPLITGGSGVALGLPSN
FRLGGLLPERGDAAALPAIGGASAVLAGSASKATHAQVAAWRAERPALRIDPFAAARGEPVVDQALAFARAHLPQPVLIY
ASAAPDEVKQVQQALGIEAAGHLVEATLAAIARGLREMGVRKFVVAGGETSGAVVQALGVKALRIGAQIDPGVPATATTE
GSPCGTTEGSPCGATEGSPRGTPDAQPLGLALKSGNFGSVDFFEKALRALEGAA

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=388, Percent_Identity=45.360824742268, Blast_Score=317, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 46606; Mature: 46474

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDQALRPLLGCIADDFTGATDLANMLVKSGMRTVQTIGVPAAGAAVPADAIVVALKSR
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHEEEEECCC
TIPAADAVAQSLAALDWLRAQGCRQFFFKYCSTFDSTDAGNIGPVADALLDALGGERAFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEE
IACPAFPENGRTVYRGHLFVGDALLGESGMENHPLTPMKDANLVRVLQRQTPSKVGLIRH
EECCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCEEEC
DAIALGTCAVRETIDTLRREGVRIAIADALTDRDLYVLGEACADLPLITGGSGVALGLPS
CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEHHHHCCCEEECCCEEEEECCC
NFRLGGLLPERGDAAALPAIGGASAVLAGSASKATHAQVAAWRAERPALRIDPFAAARGE
CCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHCCCCCEEECCHHCCCCC
PVVDQALAFARAHLPQPVLIYASAAPDEVKQVQQALGIEAAGHLVEATLAAIARGLREMG
CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
VRKFVVAGGETSGAVVQALGVKALRIGAQIDPGVPATATTEGSPCGTTEGSPCGATEGSP
CEEEEEECCCCCCHHHHHHCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RGTPDAQPLGLALKSGNFGSVDFFEKALRALEGAA
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STDQALRPLLGCIADDFTGATDLANMLVKSGMRTVQTIGVPAAGAAVPADAIVVALKSR
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCHHHEEEEECCC
TIPAADAVAQSLAALDWLRAQGCRQFFFKYCSTFDSTDAGNIGPVADALLDALGGERAFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEE
IACPAFPENGRTVYRGHLFVGDALLGESGMENHPLTPMKDANLVRVLQRQTPSKVGLIRH
EECCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCEEEC
DAIALGTCAVRETIDTLRREGVRIAIADALTDRDLYVLGEACADLPLITGGSGVALGLPS
CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEHHHHCCCEEECCCEEEEECCC
NFRLGGLLPERGDAAALPAIGGASAVLAGSASKATHAQVAAWRAERPALRIDPFAAARGE
CCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHCCCCCEEECCHHCCCCC
PVVDQALAFARAHLPQPVLIYASAAPDEVKQVQQALGIEAAGHLVEATLAAIARGLREMG
CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
VRKFVVAGGETSGAVVQALGVKALRIGAQIDPGVPATATTEGSPCGTTEGSPCGATEGSP
CEEEEEECCCCCCHHHHHHCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RGTPDAQPLGLALKSGNFGSVDFFEKALRALEGAA
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]